| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_3829 |
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| Symbol | |
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| ID | 5388061 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | - |
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| Start bp | 4308710 |
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| End bp | 4309924 |
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| Gene Length | 1215 bp |
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| Protein Length | 404 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640866853 |
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| Product | YscD/HrpQ family type III secretion apparatus protein |
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| Protein accession | YP_001402783 |
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| Protein GI | 153947151 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR02500] type III secretion apparatus protein, YscD/HrpQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 51 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCACCG TATTCAAGCT TCGCCTGTTA AATGGTGATC TCAATGGTCG TGAGCTGATA
TTACCGGAAG GTGAATTTAC ACTGGGGGAG CAGGGGTGTG ATGTTCTGCT GCCTTTATCT
GACGGCAATA TAGTGACGCT ATGTGTTAAT GAATATCAGG TAATGATACA GGTGGCGGAG
GAGGTTTGGA TTAATGGTGC ACAGCACGAT TTACACACTC CCCTTCCACT GTTGCAATCT
ATTGAAATTG CCGGATTGGT ATTCGTTCTG GGTGAACAAA CGGATATTTT GAGTGGAATT
AAAGTCACTC ACCGTGCGAG GTTCCCTTTA TTGGTATGGC TAGCTATTGC GATATGTGTC
CCCTTATCAC TGCTGTTTGT TTTTTTATTT TGGTTAACCA CTCAGCCTGA GACATTACGT
GCTTCGATTC CTGCGGATGT CCCGACGCAA TTAGCCGAAC GCCTGCGCGA ACCCGCTTTA
CAGGGAATAA AGGGAACCTG GCTAGCGGAT GGGAGTGTCA CATTAAGTGG GCATTGTGCC
TCGTCCTCAA TGATGGAACC ACTGCAACAT TTTTTACTGC GTAACCATAT CGCCTTTCGT
AACCAATTGG TGTGTGATGA TCGCTTAATC GCTTCCGTTA GCGATCTATT ACATCAGCAT
GGTTACCACG ATATTGAGGT GCGCATCGGT GATGAACCGG GAAATATTGT GATTTATGGT
GCCGTTCAAA TGGGTGATCA GTGGTTAACC GTGCAGGACA CGCTGGCGGC GGTCTCAGGG
TTGAAAGGTT GGCTGGTGGT TAATGCTCAT TCAGGGCAAA TACAACAACT GGTGGAGCGC
TTGAGAGCGG CAGGCTTATT AGGATTCTTA AGCATGACGG AAAGTAATAA AGAGTTGGCC
ATCAGTGGTG TGCTGTCATC TGAACAGCAG CAGCAGTTAA AGGAGACATT GGCCGCTTTA
TCTCAGCAGC AACCCGGTTT TCCGTCAGTC AGGTATCAGA ATATTCCGGC GTCAGACCGA
ACGGATCAAT TTCTTCCGGC AAAGGTCGTG AGCTATGGAG GAAATACCCA GTCGGCATTT
GTGCGGTTAG CCAATGGTGG GCGTTTGCAG CAAGGGAGTG TGTTGGCAAA TGGCTATAAA
GTGGTTTTTA TTGGGGAACA GGGACTGACG TTATTAAAAG CAAATAATTT AGTACATATC
CCCATGGATT TCTAA
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| Protein sequence | MTTVFKLRLL NGDLNGRELI LPEGEFTLGE QGCDVLLPLS DGNIVTLCVN EYQVMIQVAE
EVWINGAQHD LHTPLPLLQS IEIAGLVFVL GEQTDILSGI KVTHRARFPL LVWLAIAICV
PLSLLFVFLF WLTTQPETLR ASIPADVPTQ LAERLREPAL QGIKGTWLAD GSVTLSGHCA
SSSMMEPLQH FLLRNHIAFR NQLVCDDRLI ASVSDLLHQH GYHDIEVRIG DEPGNIVIYG
AVQMGDQWLT VQDTLAAVSG LKGWLVVNAH SGQIQQLVER LRAAGLLGFL SMTESNKELA
ISGVLSSEQQ QQLKETLAAL SQQQPGFPSV RYQNIPASDR TDQFLPAKVV SYGGNTQSAF
VRLANGGRLQ QGSVLANGYK VVFIGEQGLT LLKANNLVHI PMDF
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