Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_1958 |
Symbol | oppC |
ID | 5385933 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | - |
Start bp | 2257775 |
End bp | 2258680 |
Gene Length | 906 bp |
Protein Length | 301 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640864942 |
Product | oligopeptide ABC transporter, permease protein OppC |
Protein accession | YP_001400933 |
Protein GI | 153948719 |
COG category | [E] Amino acid transport and metabolism [P] Inorganic ion transport and metabolism |
COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 0.268975 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTGAGCA AGAAAAATAG CGAAGCTCTG GACGTTTTCA GTGAAAAACT GGAAGTGGAA GGGCGCAGTC TTTGGCAGGA TGCCCGCCGT CGCTTTGTGC ATAACCGTGC GGCGATCACC AGTTTGGTGA TCCTGATGTT AATTACCTTA TTTGTTATTT TGGCTCCAAT GCTCGCGCAG TTTACCTATG AGGATACGGA TTGGGGGATG ATGTCAGCCG CTCCTGATAT TGAGTCAGGT CACTATTTTG GCACCGATTC ATCTGGCCGT GATTTACTGG TACGGGTTGC CATTGGGGGG CGTATTTCAT TGATGGTTGG CGTCGCTGCC GCGTTGGTTG CCGTGGTTGT CGGTACCTTA TACGGCTCTT TGTCCGGTTA TCTTGGCGGA AAAATAGATT CGCTAATGAT GCGTTTGCTC GAGATTCTTA ACTCCTTTCC TTTTATGTTC TTCGTTATTT TACTGGTTAC CTTCTTCGGC CAGAATATTT TATTGATCTT TGTCGCTATC GGTATGGTCT CGTGGCTGGA TATGGCACGT ATTGTTCGTG GGCAAACATT AAGCTTGAAA CGGAAAGAAT TTATTGAAGC CGCCCTGGTT GGCGGGGTTT CAACCCGCAA TATTGTCTTG CGCCATATTG TGCCGAATGT CCTTGGGGTC GTTGTGGTAT ACGCCTCTTT ATTGGTACCA AGTATGATCC TATTCGAGTC TTTTTTGAGT TTCCTTGGAT TAGGGACACA AGAACCACTG AGTAGTTGGG GGGCACTGTT GAGTGATGGT GCCAATTCAA TGGAAGTCTC ACCGTGGCTG CTGATGTTCC CTGCCGGTTT CCTGGTAGTG ACATTGTTTT GTTTTAACTT TATCGGCGAT GGCTTACGTG ATGCCCTTGA TCCGAAAGAT CGCTGA
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Protein sequence | MLSKKNSEAL DVFSEKLEVE GRSLWQDARR RFVHNRAAIT SLVILMLITL FVILAPMLAQ FTYEDTDWGM MSAAPDIESG HYFGTDSSGR DLLVRVAIGG RISLMVGVAA ALVAVVVGTL YGSLSGYLGG KIDSLMMRLL EILNSFPFMF FVILLVTFFG QNILLIFVAI GMVSWLDMAR IVRGQTLSLK RKEFIEAALV GGVSTRNIVL RHIVPNVLGV VVVYASLLVP SMILFESFLS FLGLGTQEPL SSWGALLSDG ANSMEVSPWL LMFPAGFLVV TLFCFNFIGD GLRDALDPKD R
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