Gene YpsIP31758_1852 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYpsIP31758_1852 
SymbolrbsC3 
ID5387557 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis IP 31758 
KingdomBacteria 
Replicon accessionNC_009708 
Strand+ 
Start bp2146541 
End bp2147602 
Gene Length1062 bp 
Protein Length353 aa 
Translation table11 
GC content52% 
IMG OID640864836 
Productribose ABC transporter, permease protein 
Protein accessionYP_001400827 
Protein GI153949940 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1172] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones44 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACGAGA GAACCCAAAT GCTGCATACG GCACGCTCTA CACCGGCCAA AAGCGCTGAT 
AAGCCGCGTT ATCTGAAGCT TTCGCGCTTA TTACTGGAAG GGCGCGCCTT CTTTGCATTA 
TTGGTCATTA TTGCCGTGTT TTCATTCCTC TCACCCAACT ACTTTTCTGG CGCAAATTTC 
CTGACGATGG CCTCACATGT GGCGATATTT GGCCTCCCGG CGATTGGAAT GCTACTGGTT 
ATTCTTAATG GTGGAATCGA TCTTTCTGTT GGTTCGACAT TGGGTCTGTC TGGCGTATTC 
GCGGGTTTTT TAATGCAAGG CATAAGCATT GAGTCACTTG GCGTAGTGCT TTATTTGCCG 
GTCTGGGCGG TGGTAATTAT GACCCTGGCG CTGGGCGCAT TGGTTGGGCT TATCAATGGC 
ATCTTGATCG CCATTTTTCG GGTACCTGCT TTTGTGGCAA CTCTCGGTTC ACTCTATGTA 
GCACGTGGCG CGGCACTGCT GATGACCAAT GGCTTAACCT ACAACAAACT CGCGGGTAGC 
CCCGAGTTGG GGAATACCGG TTTTGACTGG TTGGGATTTA ATCGCCTCTT TAATATTCCG 
ATTGGCGTGC TGGCTCTGGG CGTCGTGGCA CTGGCCTGTG GATTTTTACT GATGCGTACC 
GCATTTGGTC GCTGGTTGTA TGCCTCGGGA GGCAATGAGC GTGCCGCGGA TCTCTCGGGT 
GTTCCGGTTA AATTCGTCAA AATCAGCGTT TATGTTCTCT CCGGGGTTTG TGCGGCACTG 
GCCGGGTTGG TGCTCTCTTC GCAGTTAACC TCCGCAGGCC CGACAGCGGG CACCACGTAT 
GAGTTGACCG CCATTGCGGC GGTGGTGATT GGCGGTGCGG CGCTGACCGG AGGGCGTGGC 
AACGTTCGAG GCACACTACT TGGGGCTTTT GTTATTGGCT TTCTTTCCGA TGGCTTGGTG 
ATTATTGGCG TATCCGCCTA TTGGCAGACC GTATTTACTG GTGCGGTGAT TGTTATGGCG 
GTATTGCTCA ATACGTTGCA GTACGGCCGA CGAAGTAAAT AA
 
Protein sequence
MNERTQMLHT ARSTPAKSAD KPRYLKLSRL LLEGRAFFAL LVIIAVFSFL SPNYFSGANF 
LTMASHVAIF GLPAIGMLLV ILNGGIDLSV GSTLGLSGVF AGFLMQGISI ESLGVVLYLP 
VWAVVIMTLA LGALVGLING ILIAIFRVPA FVATLGSLYV ARGAALLMTN GLTYNKLAGS 
PELGNTGFDW LGFNRLFNIP IGVLALGVVA LACGFLLMRT AFGRWLYASG GNERAADLSG 
VPVKFVKISV YVLSGVCAAL AGLVLSSQLT SAGPTAGTTY ELTAIAAVVI GGAALTGGRG 
NVRGTLLGAF VIGFLSDGLV IIGVSAYWQT VFTGAVIVMA VLLNTLQYGR RSK