| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_0881 |
|---|
| Symbol | recJ |
|---|
| ID | 5388323 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis IP 31758 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009708 |
|---|
| Strand | + |
|---|
| Start bp | 1063295 |
|---|
| End bp | 1065028 |
|---|
| Gene Length | 1734 bp |
|---|
| Protein Length | 577 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640863846 |
|---|
| Product | ssDNA exonuclease RecJ |
|---|
| Protein accession | YP_001399865 |
|---|
| Protein GI | 153947712 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0608] Single-stranded DNA-specific exonuclease |
|---|
| TIGRFAM ID | [TIGR00644] single-stranded-DNA-specific exonuclease RecJ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 0.796775 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACGTTGA AAACCCAACT TCGCCGCCGT GAGGCGGCAG ATGACAGCCA TTTACCTGCG
CAATTGCCCC CGTTACTGCG TCGTCTCTAT GCTAGCCGTG GCGTAAAGGA TGCGCAGGAG
TTGGAGAGGG GCGTGAAAGG CCTACTGGCA TGGCAAAAAC TGGATGGTAT TGACGCTGGC
GTCACCTTAT TACAACAAGC CCTGGCTGAT CGGCGGCGTA TTGTCATTGT CGGCGATTTT
GATGCTGACG GCGCGACCAG TACCGCGTTG GCGGTGCTGG CTTTGCGCAG TATGGGCGGC
AGTAACCTGG ATTATCTGGT ACCTAACCGA TTTGAAGATG GTTATGGGCT TAGCCCCGAA
GTGGTTGAAC AAGTTGCGGC CAGAGGGGCA GAGCTGATTG TTACTGTGGA TAACGGTATT
TCCTCTCATG CCGGGGTCGA TCTGGCTCAT GCCAAAGGTA TTCAGGTTCT GGTGACGGAC
CACCATTTGC CGGGCGAAAC ATTACCCGCG GCGGATGCCA TCATTAACCC AAATCTGGCC
GGTTGCGATT TTTTATCCAA GTCATTGGCG GGGGTCGGTG TCACTTTCTA TTTGATGCTG
GCGCTGCGCG CCCGTCTCAG GGAATGTGGT TGGTTTGAAC AACGTACCTT AGCGGTCCCT
AATCTGGCTG AACTGTTGGA TTTGGTGGCA TTGGGTACGG TGGCAGATGT GGTGCCGTTG
GATGCCAATA ACCGTATTTT GGTCCATCAA GGGTTAAGTC GTATTCGTGC GGGGAAGTGC
CGTCCAGGAA TTCGCGCATT ATTGGAGGTC GCTAACCGTG ATGCGCGTCA ACTGGTTGCG
AACGATTTAG GCTTTTCTCT TGGCCCACGG TTGAATGCGG CGGGGCGTTT AGATGATATG
TCCATCGGGG TGGCGCTACT GCTGAGTGAC GATATTGCTC AGGCGCGAGC ACTGGCAATC
GATCTTGACA CCTTGAATCA AACCCGGCGC GAGATAGAAC AGGGTATGCA GGTTGAAGCT
TTGCAACTGT GTGACCAGTT GGAGCGCACC AGCAGTGAAT TACCTTACGG TATCGCGATG
TACCATCCAG AATGGCATCA GGGCGTTGTG GGTATTTTGG CTTCACGCAT CAAAGAACGC
TTTCACCGCC CGGTTATCGC TTTTGCCCCG GCGGGAGAAG GGTTATTGAA AGGGTCGGGT
CGTAGCGTTG CGGGTTTGCA TATGCGTGAT GCCCTTGAGC GTCTGGACAC TCTGAACCCA
GGGTTAATAC TGAAGTTTGG TGGGCACGCC ATGGCGGCAG GGTTATCGCT GGAGGAAGGT
AAATTCGATG AATTCCGCCA GCGTTTTGCA GATTTAGTCG GTGAATGGAT GGATGCTTCG
CAATTGGAAG GCGTTATTTG GTCTGATGGC GAACTGAACG GTGCTGAGTT ATCACTGGAG
ACCGCAGAGC TATTGCGCGA CGGTGGTCCA TGGGGGCAAT CTTTCCCTGA GCCGACCTTT
GATGGCAAAT TCCGTATCTT ACAGCAGCGC TTAGTGGGTG AGCGTCACCT GAAACTCATG
GTAGAGCCGC TGAATGGCGG GCCTTTGTTA GATGGAATTG CCTTTAATGT CGATACCACT
TTGTGGCCGG ATAGCAGCGT GCGAGAAGTT AAATTGGCCT ATAAACTGGA TATTAATGAA
TATCGTGGTA ATCGTAGTGT TCAGTTGCTG GTTCAACACT TGTGGCCTTA TTAG
|
|---|
| Protein sequence | MTLKTQLRRR EAADDSHLPA QLPPLLRRLY ASRGVKDAQE LERGVKGLLA WQKLDGIDAG
VTLLQQALAD RRRIVIVGDF DADGATSTAL AVLALRSMGG SNLDYLVPNR FEDGYGLSPE
VVEQVAARGA ELIVTVDNGI SSHAGVDLAH AKGIQVLVTD HHLPGETLPA ADAIINPNLA
GCDFLSKSLA GVGVTFYLML ALRARLRECG WFEQRTLAVP NLAELLDLVA LGTVADVVPL
DANNRILVHQ GLSRIRAGKC RPGIRALLEV ANRDARQLVA NDLGFSLGPR LNAAGRLDDM
SIGVALLLSD DIAQARALAI DLDTLNQTRR EIEQGMQVEA LQLCDQLERT SSELPYGIAM
YHPEWHQGVV GILASRIKER FHRPVIAFAP AGEGLLKGSG RSVAGLHMRD ALERLDTLNP
GLILKFGGHA MAAGLSLEEG KFDEFRQRFA DLVGEWMDAS QLEGVIWSDG ELNGAELSLE
TAELLRDGGP WGQSFPEPTF DGKFRILQQR LVGERHLKLM VEPLNGGPLL DGIAFNVDTT
LWPDSSVREV KLAYKLDINE YRGNRSVQLL VQHLWPY
|
|---|
| |