| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_0298 |
|---|
| Symbol | metH |
|---|
| ID | 5384877 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis IP 31758 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009708 |
|---|
| Strand | + |
|---|
| Start bp | 337763 |
|---|
| End bp | 341455 |
|---|
| Gene Length | 3693 bp |
|---|
| Protein Length | 1230 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640863268 |
|---|
| Product | B12-dependent methionine synthase |
|---|
| Protein accession | YP_001399292 |
|---|
| Protein GI | 153947164 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain
[COG1410] Methionine synthase I, cobalamin-binding domain |
|---|
| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.183205 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGATACAG TAATCGATAA TAAGGTCAAG GAATTGCACC AGCAGTTGGC GCAACGCATT
TTGGTACTGG ATGGTGGTAT GGGCACCATG ATCCAGAGCT ACCGATTAGA AGAAGCAGAT
TACCGAGGCG CGCGTTTTGC TGACTGGGCA AGTGACCTAA AAGGTAACAA TGACCTCTTG
GTGCTCTCCA AGCCAGAAGT CATCACGGCG ATCCATAATG CCTACCTTGA AGCCGGTGCT
GACATTCTCG AAACCAATAC CTTTAACTCT ACCTCCATTG CGATGGCAGA CTATCAGATG
GCGTCACTGT CGGCTGAAAT TAACTATGAA GCCGCCCGTC TGGCCCGTGT CTGTGCCGAT
GAATGGAGCG CCCGCACGCC AGAAAAACCA CGTTATGTTG CCGGGGTGCT GGGGCCAACC
AACCGTACTG CCTCCATCTC CCCTAAAGTT AATGACCCGG CGTTCCGTAA CGTCAGTTTT
GATCAGTTGG TCGAGGCCTA TCGTGAGTCT ACCCGCGCGC TGATTGAAGG GGGTGTTGAT
TTAATTATGA TCGAAACGGT CTTCGATACG TTGAATGCGA AGGCCGCGAC CTTTGCGGTT
GAAAGCGAAT TCGAAGCGAT GGGCGTGCTG TTGCCGGTGA TGATTTCCGG CACCATTACC
GATGCCTCCG GCCGTACGCT GTCTGGTCAA ACGACGGAAG CTTTTTATAA CTCGCTGCGC
CATGTCAAAC CGCTGTCGTT TGGTCTGAAT TGTGCGCTGG GGCCGGATGA ACTGCGCCAA
TATGTTGCTG AGTTATCGCG TATCTCTGAA TATTATGTCA GTGCGCACCC GAATGCCGGT
TTGCCGAATG CTTTTGGTGA ATATGATCTG GAAGCCAAAG AGATGGCTGA GCAGATTGGC
GAGTGGGCAC GTGCCGGATT TTTGAATATT GTCGGCGGTT GCTGCGGTAC CACACCCCGG
CATATTGCGG CGATGGTCAA CGCTGTCGCT GGGGTGCCTC CGCGCCCGTT GCCTGATATT
CCGGTTGCCT GCCGTTTGGC CGGGCTGGAG CCACTGACTA TCGATGCCAA TACCCTGTTT
GTGAACGTCG GTGAGCGGAC CAACGTCACG GGTTCGGCAC GCTTTAAACG GCTGATAAAA
GAAGAGAAGT ACGGAGAGGC GCTGGATGTT GCCCGCCAAC AGGTCGAAAG CGGCGCGCAG
ATCATCGATA TCAACATGGA CGAAGGCATG TTGGATGCCG AAGCGGCCAT GGTGCGTTTC
CTTAATCTGA TTGCCGGGGA GCCTGATATT GCCAGGGTGC CGATTATGAT CGACTCCTCA
AGGTGGGATG TGATTGAAAA AGGCCTGAAA TGTATTCAAG GCAAAGGCAT CGTGAACTCC
ATTTCGATGA AAGAGGGCGT TGATGCCTTT ATTCATCACG CCAAACTGGT ACGCCGTTAT
GGTGCCGCCA TGGTGGTCAT GGCCTTTGAT GAAACCGGGC AAGCCGATAC CCGCGCACGC
AAAATCGAGA TTTGCCGCCG TGCGTATAAA ATATTGACGG AAACCGTCGG TTTCCCACCA
GAAGATATTA TCTTCGATCC GAATATTTTT GCCGTAGCGA CGGGGATTGA AGAGCATAAC
AATTATGCCG TCGATTTTAT TGAAGCCTGT GCCGATATCA AAGCCGAGTT GCCTCACGCA
CTGATTTCTG GCGGTGTCTC CAACGTTTCC TTCTCTTTCC GAGGGAATGA TCCAGTACGT
GAAGCCATTC ATGCAGTGTT CCTCTATTAC GCTATTCGCA ATGGCATGGA TATGGGGATT
GTTAACGCCG GTCAATTGGC GATTTATGAC GACCTGTCTG ATGAATTACG TGATGCGGTC
GAGGATGTGA TCCTCAACCG CCGTGATGAC AGTACTGAGC GCCTGCTGGA TTTAGCAGAA
AAATACCGTG ACAGTAAAAG TGGCGAGGTC GCGATCCAGC AAGCAGAATG GCGTGGTTGG
TCGGTGGTGA AACGGTTGGA GTATTCGCTG GTAAAAGGCA TTACTGAATT TATTGAGCTG
GATACCGAAG AAGCGCGCCA GCAGGCAGAT CGGCCAATTG AAGTGATTGA AGGGCCGTTA
ATGTCTGGGA TGAATGTGGT TGGTGACTTG TTTGGTGAAG GAAAAATGTT CCTGCCACAG
GTTGTAAAAT CAGCCAGGGT AATGAAACAG GCGGTGGCCT ATCTCGAACC TTATATTGAA
GCCAGTAAGC AGAAGGGTAC CACCGCCGGT AAAATCTTAT TAGCAACCGT CAAAGGCGAT
GTGCATGACA TCGGCAAGAA CATCGTGGGT GTGGTTTTGC AGTGTAATAA CTATGAAATC
ATCGATCTGG GCGTGATGGT GCCGACGGAA AAAATTCTGC GCACTGCACG GGAAGAGAAG
GTGGATATTA TCGGCCTGTC TGGTTTGATT ACCCCGTCGC TGGACGAGAT GGTTAACGTG
GCGAAAGAGA TGGAGCGCCA AGGCTTTACG CTGCCGTTGC TCATTGGTGG CGCAACGACA
TCCAAAGCTC ACACCGCGGT CAAGATTGAA CAAAATTATA GCGGTTCCAC CACGTATGTC
TCTAACGCCT CGCGCAGTGT GGGCGTGGTA TCCGCGTTGC TATCGGATAC GCAACGGGAG
GCATTTGTGG CAAAAACCCG CAAAGAATAT GAGACTGTAC GTATCCAACA TGCCCGTAAA
AAACCGCGCA CCCCGCCGGT CAGTTTGCAA GCTGCACGGA ATAACCCAAC GGTGATTGAT
TGGGAGAACT ACACTCCGCC AGTGGCCCAT AAATTGGGGG TACAGGTGGT GGAGGCCAGT
ATTGAAACTC TGCGCAACTA TATCGACTGG ACGCCATTCT TTATGACCTG GTCGTTGGCA
GGCAAGTATC CGCGCATTTT GGAAGATGAG GTGGTGGGGG AGGAGGCCAA GCGCCTGCTC
GCCGACGCCA ATGCTTTGTT GGATAAACTG TCCGCCGAGG ATCTGCTGCA TCCAAAAGGC
GTGGTTGGTC TGTTCCCGGC TAACAGCGTC GGCGATGATA TCGAAATTTA CCGTGATGAG
CGGCGAGATG AGGTACTGGC CATCAGCTAT CATTTACGCC AACAGACCGA AAAAACCGAT
TTCCCGAACT ACTGTTTGGC TGATTATGTC GCGCCTAAAT CCAGTGGCAA AGCCGATTAT
TTTGGCGCTT TTGCGGTGAC CGGTGGCTTG GAAGAAGACG CGTTGGCTGA TGCTTATGAT
GCGCAACGTG ATGATTACAA TAAAATTATG ATTAAGGCGT TATCAGACCG TCTGGCCGAA
GCCTTTGCCG AGTATCTGCA TGAGCGAGTA CGTAAAGTGT ATTGGGGCTT TGCACCGAAC
GAAAATCTGA GTAACGAAGA GTTGGTGCGC GAGAATTATC AGGGGATCCG CCCGGCACCG
GGCTATCCCG CTTGTCCGGA ACACACCGAG AAAGGCCAAA TCTGGCAGTT GTTGGATGTT
GAAACTCACA CTGGCATGAA ACTGACCGAA TCCTACGCCA TGTGGCCGGG GGCTTCGGTA
TCCGGTTGGT ATTTCAGCCA CCCAGACAGC AAATATTTTG CCGTAGCACA AATTCAGCGT
GATCAGGTTG AGGATTATGC CGCTCGTAAA GGGATGCCTA TCGCTGAAGT TGAACGCTGG
CTAGCCCCTA ATCTGGGTTA CGACGCAGAT TGA
|
|---|
| Protein sequence | MDTVIDNKVK ELHQQLAQRI LVLDGGMGTM IQSYRLEEAD YRGARFADWA SDLKGNNDLL
VLSKPEVITA IHNAYLEAGA DILETNTFNS TSIAMADYQM ASLSAEINYE AARLARVCAD
EWSARTPEKP RYVAGVLGPT NRTASISPKV NDPAFRNVSF DQLVEAYRES TRALIEGGVD
LIMIETVFDT LNAKAATFAV ESEFEAMGVL LPVMISGTIT DASGRTLSGQ TTEAFYNSLR
HVKPLSFGLN CALGPDELRQ YVAELSRISE YYVSAHPNAG LPNAFGEYDL EAKEMAEQIG
EWARAGFLNI VGGCCGTTPR HIAAMVNAVA GVPPRPLPDI PVACRLAGLE PLTIDANTLF
VNVGERTNVT GSARFKRLIK EEKYGEALDV ARQQVESGAQ IIDINMDEGM LDAEAAMVRF
LNLIAGEPDI ARVPIMIDSS RWDVIEKGLK CIQGKGIVNS ISMKEGVDAF IHHAKLVRRY
GAAMVVMAFD ETGQADTRAR KIEICRRAYK ILTETVGFPP EDIIFDPNIF AVATGIEEHN
NYAVDFIEAC ADIKAELPHA LISGGVSNVS FSFRGNDPVR EAIHAVFLYY AIRNGMDMGI
VNAGQLAIYD DLSDELRDAV EDVILNRRDD STERLLDLAE KYRDSKSGEV AIQQAEWRGW
SVVKRLEYSL VKGITEFIEL DTEEARQQAD RPIEVIEGPL MSGMNVVGDL FGEGKMFLPQ
VVKSARVMKQ AVAYLEPYIE ASKQKGTTAG KILLATVKGD VHDIGKNIVG VVLQCNNYEI
IDLGVMVPTE KILRTAREEK VDIIGLSGLI TPSLDEMVNV AKEMERQGFT LPLLIGGATT
SKAHTAVKIE QNYSGSTTYV SNASRSVGVV SALLSDTQRE AFVAKTRKEY ETVRIQHARK
KPRTPPVSLQ AARNNPTVID WENYTPPVAH KLGVQVVEAS IETLRNYIDW TPFFMTWSLA
GKYPRILEDE VVGEEAKRLL ADANALLDKL SAEDLLHPKG VVGLFPANSV GDDIEIYRDE
RRDEVLAISY HLRQQTEKTD FPNYCLADYV APKSSGKADY FGAFAVTGGL EEDALADAYD
AQRDDYNKIM IKALSDRLAE AFAEYLHERV RKVYWGFAPN ENLSNEELVR ENYQGIRPAP
GYPACPEHTE KGQIWQLLDV ETHTGMKLTE SYAMWPGASV SGWYFSHPDS KYFAVAQIQR
DQVEDYAARK GMPIAEVERW LAPNLGYDAD
|
|---|
| |