| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_0105 |
|---|
| Symbol | |
|---|
| ID | 5386524 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis IP 31758 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009708 |
|---|
| Strand | - |
|---|
| Start bp | 111233 |
|---|
| End bp | 113347 |
|---|
| Gene Length | 2115 bp |
|---|
| Protein Length | 704 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640863064 |
|---|
| Product | bacteriocin ABC transporter, ATP-binding/permease protein |
|---|
| Protein accession | YP_001399105 |
|---|
| Protein GI | 153949267 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATGATA CGCATTTTAA CGAGATAAAA AACCGTCTGA ATTTTAGCTT TCGTCGTAAA
GTCCCACAGG TGCTTCAAAC CGAAGCAGCA GAATGCGGAC TTGCCTGTCT GGTAATGGCA
TGCCGCTACC ATGGGATGGA TATAGATTTA TTTAATTTAC GCCAACGTTT TGGTATTTCT
TCTCATGGCG CAACATTAGC GCTATTAATT AATATATCAG CACAACTTAA GTTTAAAACC
CGTGCTTTAT CACTGGATTT AGATGAGTTA CGCCAATTAA AAACACCCTG TATATTGCAT
TGGGATATGA GCCATTTTGT CGTCCTTGTT GCAGTGAAGG GCACCCGGTT TATTATTCAC
GACCCGGCAT TTGGCCGGCG TACTGTCAGC CTAAGTGAGA TGTCACAGCA TTTTACCGGT
GTCGCACTGG AATTATGGCC TGACAGTGAA TTTACCCGCC AAAAAAGCCG TACCCGTTTA
AGCCTATTAT CACTGATGCG TAATATCAGC GGCTTACCTG GCTTTCTGAC AAAAATATTT
TGCTTATCGT TAATGGTCGA GGCCATTAAC CTACTGCTAC CGGTAGGAAC TCAGTTGGTC
ATGGACCATG TGATCATTGC CGAGGACCAT GACCTATTAG CATTGATTTG TATCGGCCTG
CTTTTCTTTA TTCTGTTCCG CACGTTTTTA AGTATGTTGC GATCGTGGAC ATCGCTGGTT
ATGGGGTCTT TAGTTGATGT GCAATGGAAG GCGGGTTTAT TTGATCATCT ACTCAAATTA
CCTTTGGCTT ATTTTGAAAA ACGTAAACTG GGCGATATTC AGTCACGGTT TGGCTCCCTC
GATATCATAC GTTCAACATT AACCAACAAT GTGGTCAACG GCATCATTGA CGGTCTAATG
TCTATTGGCG TGTTTATCAT GATGTTTTTG TATGGTGGCT GGCTGGTTTG GGTGGTACTT
GGTTTTACCG CCATGTACAT GATCCTGCGC CTTGCCACTT ATAATCAATA CCGTCAGGCT
TCCGAAGAGC AAATTGTAAA AAATGCCAAA GCCAGCTCTC ATTTTATGGA AACACTTTAT
GGCATCAGTA CGCTTAAGGC CCTGGGGCTG GCAGCAACAC GCTCACAATT TTGGCTCAAT
CTAAACATAG ACACGACCAA TGCCAATATC CGACTGACTA AGTTAGATAT GTTTTTTGGC
GGCGTAAACA CACTGATCGG CACCATCGAT CAAGTTGTCA TCTTATGGCT AGGCGCGTCG
ATGGTGATTG ATGGGCAAAT GACATTAGGT ATGTTTGTTG CCTTTAATGC TTATCGGGGA
CAATTTTCTG ATCGGGCAAC CAACTTGATC AATATGGTGT TGCAACTCCG TATGCTTGCC
TTGCACAGTG AGCGTATTGC CGACATTGTT TTCACCGAAA CCGAAAAAGA ACAGACCCCC
AGACAACTGC TTTCACCCAA TCAACCTGCG GTCTTTGAAG CTCGAAACAT TGCTTTTCAA
TATGACAATC TGTCAAAACC TATTTTTTCT GATTTGAACA TTCACGTTGA AGCGGGTGAG
AGTGTGGCGA TTACTGGCCC ATCGGGTATA GGAAAAACCA CGTTGATGAA AGTGATAGCC
GGGCTGCTGA CACCTTCACA GGGGCATATT CTGATTGATG GGCTGGATAT AACGACGGTC
GGCCTGAATA ATTATCGTGA TTGCATTGCC TGCGTGCTCC AGGATGACAA GCTGTTCGCA
GGTTCCATCG CTGACAACAT TGCCAGTTTT GATGTCAACA AAGATGAGCA GCGTATTCTT
TCCTGTGCTA ATCATTGCAA TATACATAAA GAAATTATGC ATATGCCGAT GGGTTATGAA
ACGTTGATTA GTGAGCTTGG AGGCAGTTTA TCGGGCGGGC AGAAGCAACG TTTATTGATT
GCCAGAGCGT TGTATCGTCA ACCTAGTTTA CTGTTTCTGG ACGAGGCAAC AAGTCATCTG
GACTTAGCAA ACGAAGCACA TATCAATAAT GCGATAGCCT CACTGAAGAT CACCCGTATT
TTTATCGCCC ATCGTCCTTC AACGATAGCC AGTGCCCAGC GTATTATTAA TCTGGAAAAA
CAAAACGTAT CGTAA
|
|---|
| Protein sequence | MNDTHFNEIK NRLNFSFRRK VPQVLQTEAA ECGLACLVMA CRYHGMDIDL FNLRQRFGIS
SHGATLALLI NISAQLKFKT RALSLDLDEL RQLKTPCILH WDMSHFVVLV AVKGTRFIIH
DPAFGRRTVS LSEMSQHFTG VALELWPDSE FTRQKSRTRL SLLSLMRNIS GLPGFLTKIF
CLSLMVEAIN LLLPVGTQLV MDHVIIAEDH DLLALICIGL LFFILFRTFL SMLRSWTSLV
MGSLVDVQWK AGLFDHLLKL PLAYFEKRKL GDIQSRFGSL DIIRSTLTNN VVNGIIDGLM
SIGVFIMMFL YGGWLVWVVL GFTAMYMILR LATYNQYRQA SEEQIVKNAK ASSHFMETLY
GISTLKALGL AATRSQFWLN LNIDTTNANI RLTKLDMFFG GVNTLIGTID QVVILWLGAS
MVIDGQMTLG MFVAFNAYRG QFSDRATNLI NMVLQLRMLA LHSERIADIV FTETEKEQTP
RQLLSPNQPA VFEARNIAFQ YDNLSKPIFS DLNIHVEAGE SVAITGPSGI GKTTLMKVIA
GLLTPSQGHI LIDGLDITTV GLNNYRDCIA CVLQDDKLFA GSIADNIASF DVNKDEQRIL
SCANHCNIHK EIMHMPMGYE TLISELGGSL SGGQKQRLLI ARALYRQPSL LFLDEATSHL
DLANEAHINN AIASLKITRI FIAHRPSTIA SAQRIINLEK QNVS
|
|---|
| |