| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpAngola_B0045 |
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| Symbol | yscR |
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| ID | 5798253 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pestis Angola |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010157 |
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| Strand | + |
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| Start bp | 29890 |
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| End bp | 30543 |
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| Gene Length | 654 bp |
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| Protein Length | 217 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641337856 |
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| Product | type III secretion system protein |
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| Protein accession | YP_001604476 |
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| Protein GI | 162417761 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4790] Type III secretory pathway, component EscR |
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| TIGRFAM ID | [TIGR01102] type III secretion apparatus protein, YscR/HrcR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.00000000772372 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 88 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCCAGT TACCGGATGA AATTAATCTC ATCATCGTTT TATCTTTGCT GACTCTGCTT
CCATTGATTT CGGTAATGGC TACATCGTTT GTCAAATTTG CGGTGGTCTT TTCACTACTC
CGCAATGCCC TTGGGGTACA GCAAATCCCC CCCAACATGG CAATGTATGG CTTAGCAATC
ATCCTTAGTC TTTATGTAAT GGCACCCGTT GGCTTCGCGA CGCAAGACTA TTTACAAGCT
AATGAGGTTA GCCTCACGAA CATAGAATCT GTTGAGAAAT TCTTTGATGA AGGGCTTGCC
CCCTATCGCA TGTTCCTTAA GCAGCATATT CAAGCGCAAG AATACTCTTT TTTTGTTGAC
AGCACTAAAC AGTTATGGCC CAAGCAGTAT GCTGACCGGT TAGAGTCAGA CAGCCTGTTC
ATTTTATTGC CTGCGTTTAC GGTGAGTGAG TTGACTCGAG CATTTGAGAT AGGCTTTCTC
ATCTATTTAC CATTTATCGT CATTGACCTG GTTATTTCCA ATATCTTGTT GGCAATGGGG
ATGATGATGG TTTCCCCCAT GACTATTTCA CTGCCATTTA AATTGCTGCT ATTTGTTTTA
CTTGATGGCT GGACACGACT CACGCATGGG CTGGTGATTA GCTACGGAGG GTGA
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| Protein sequence | MIQLPDEINL IIVLSLLTLL PLISVMATSF VKFAVVFSLL RNALGVQQIP PNMAMYGLAI
ILSLYVMAPV GFATQDYLQA NEVSLTNIES VEKFFDEGLA PYRMFLKQHI QAQEYSFFVD
STKQLWPKQY ADRLESDSLF ILLPAFTVSE LTRAFEIGFL IYLPFIVIDL VISNILLAMG
MMMVSPMTIS LPFKLLLFVL LDGWTRLTHG LVISYGG
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