| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpAngola_A1877 |
|---|
| Symbol | mmsA |
|---|
| ID | 5800348 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pestis Angola |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010159 |
|---|
| Strand | - |
|---|
| Start bp | 1944568 |
|---|
| End bp | 1946094 |
|---|
| Gene Length | 1527 bp |
|---|
| Protein Length | 508 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 641339808 |
|---|
| Product | methylmalonate-semialdehyde dehydrogenase |
|---|
| Protein accession | YP_001606363 |
|---|
| Protein GI | 162419385 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01722] methylmalonic acid semialdehyde dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 48 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.00719864 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGAGACGG TAGCGAATTT TATTAATGGC AAATGTGTCT TTAGTTGCGG CAACAGTGTC
ACCAGCGGTA GCCCGCGCGC TCAGGCAATC TTCAACTCAG CCACTGGCGA ACCTATCCGT
CAGGTGATGA TGAGCACAGC GCAGGAGACC GAGCAGGCCA TCACGGCGGC ACAACAAGCG
TTCGCCAGTT GGTCGCGCCA AGCGCCACTT AAACGCGCGC GCGTGATGTT CCGGTTTAAA
AGTTTGCTGG AGCAGCATCT GGATGCATTG GCACAGCTTA TTAGCGAAGA GCATGGAAAA
GTGTATTCCG ATGCGGTGGG TGAGCTAACC CGAGGTCTGG AAGTGGTGGA ATTCGCCTGT
GGCATTCCGC ACCTCCAAAA AGGCGAGCAC TCAGCCAATG TTGGCACTGG CGTGGACAAT
CACTCGTTGA TGCAGCCGCT GGGGGTGTGC GTGGGGATTA CGCCCTTTAA TTTCCCCGCG
ATGGTACCGA TGTGGATGTT CCCGATAGCC CTGGCGACCG GGAATACTTT TGTACTGAAA
CCGTCCGAAA AGGATCCGTC GCTGGCTGTG CGGCTGGCAC AACTTTTAAC CGAGGCCGGG
CTACCAGACG GTGTATTTAA CGTCGTACAG GGTGATAAAA CCGCAGTGGA CGTGCTGTTG
ACCGATCCGC GAGTGCAGGC AGTAAGCTTT GTCGGTTCTA CGCCGATTGC TGAATATATC
TACCAGACCG CATCGGCCCA CGGAAAACGC TGCCAGGCAC TGGGCGGGGC CAAAAACCAC
TGCATTCTGA TGCCGGACGC CGATATGGAC ATGGCGGCTA GCGCCATTAT GGGCGCGGCA
TACGGCGCGG TAGGGGAGCG CTGTATGGCG CTCTCGGTGG TGTTGGCGGT GGGGGATGAA
ACGGCAGATA ACCTTTGCGC ACGGCTGGAA CAGCAAATTA GCACGTTACG TGTTGGTCCG
GGGCTGGCAC AGGAGCCAGA AAACGACATG GGGCCGCTGA TCTCTGCGCC ACACCGCGCG
AAGGTATTGG GGTATATCGA CAGCGGCGTG GCCCAGAAGG CAACGTTGCG CATCGATGGC
CGTGGTTTGA AGGTGGCGGG CCATGAGCAA GGGTATTTTG TCGGGCCAAC GTTGTTCGAT
CATGTCACCC CGGCCATGAC CATTTATCAA GAAGAGATTT TTGGACCGGT ACTTTCTGTG
GTACGTATCG CGGATTATCG CAGTGCGGTG GATCTGATCA ACCGTCATGA ATATGGTAAT
GGCACGGCTA TTTTCACCCG CGATGGGGGT ACCGCACGCC GCTTCTGTGA GGAGGTACAG
GTGGGGATGG TCGGCGTCAA CGTGCCGATC CCAGTACCGG TGGCGTTTCA TAGCTTCGGC
GGCTGGAAAC GTTCGATTTT CGGGCCGCTC AACGTGCATG GCAATGACGG GGTGCGCTTC
TACACGCGGA TGAAAACCAT CACTGCCCGC TGGCCAGAAG CACAGCATGA TCAGGGCGCG
GCATTCTCTA TGCCGACACT CGGTTGA
|
|---|
| Protein sequence | METVANFING KCVFSCGNSV TSGSPRAQAI FNSATGEPIR QVMMSTAQET EQAITAAQQA
FASWSRQAPL KRARVMFRFK SLLEQHLDAL AQLISEEHGK VYSDAVGELT RGLEVVEFAC
GIPHLQKGEH SANVGTGVDN HSLMQPLGVC VGITPFNFPA MVPMWMFPIA LATGNTFVLK
PSEKDPSLAV RLAQLLTEAG LPDGVFNVVQ GDKTAVDVLL TDPRVQAVSF VGSTPIAEYI
YQTASAHGKR CQALGGAKNH CILMPDADMD MAASAIMGAA YGAVGERCMA LSVVLAVGDE
TADNLCARLE QQISTLRVGP GLAQEPENDM GPLISAPHRA KVLGYIDSGV AQKATLRIDG
RGLKVAGHEQ GYFVGPTLFD HVTPAMTIYQ EEIFGPVLSV VRIADYRSAV DLINRHEYGN
GTAIFTRDGG TARRFCEEVQ VGMVGVNVPI PVPVAFHSFG GWKRSIFGPL NVHGNDGVRF
YTRMKTITAR WPEAQHDQGA AFSMPTLG
|
|---|
| |