| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_4245 |
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| Symbol | trmE |
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| ID | 6088624 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | - |
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| Start bp | 4684837 |
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| End bp | 4686201 |
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| Gene Length | 1365 bp |
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| Protein Length | 454 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 641599344 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_001722954 |
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| Protein GI | 170026449 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.00411948 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGCACCA CTGATACTAT CGTGGCCCAA GCAACGCCCC CTGGTCGTGG CGGTGTCGGC
ATTCTACGTG TTTCAGGTCG TGCTGCCTCA GAGGTTGCAC ACGCCGTTCT GGGTAAATTA
CCTAAGCCAC GTTATGCCGA TTATCTGCCG TTTAAAGACG TGGATGGCAG CACGCTGGAT
CAAGGTATCG CTCTCTATTT CCCCGGTCCA AATTCTTTCA CTGGCGAAGA TGTATTAGAG
CTGCAAGGCC ATGGTGGGCC GGTGATACTG GATTTACTGT TAAAACGCAT TCTGGCCCTG
CCAGGGCTGC GTATTGCCCG CCCTGGGGAG TTTTCCGAGC GTGCCTTCCT CAACGACAAG
CTGGACTTAG CACAGGCTGA AGCCATTGCC GACCTGATCG ACGCCAGTTC AGAGCAAGCA
GCACGTTCGG CAGTAAACTC ATTGCAAGGC GCATTTTCAG CGCGTATCCA TCAATTGGTG
GAAGCACTTA CTCACCTGAG AATCTACGTT GAAGCTGCCA TTGACTTTCC AGATGAGGAA
ATTGACTTCC TTTCTGATGG CAAAATCGAA GGCCAACTGA ATGGTGTCAT GGCCGATCTG
GAACAGGTAC GTACTGAGGC TAGACAAGGC AGCTTACTAC GTGAAGGGAT GAAAGTGGTG
ATTGCTGGCC GGCCAAACGC AGGGAAATCC AGTTTACTCA ATGCGTTAGC TGGCCGTGAA
GCGGCGATTG TAACGGATAT CGCGGGCACC ACCCGTGATG TTTTACGGGA ACACATTCAT
ATTGATGGGA TGCCTTTACA TATCATTGAT ACCGCAGGGT TGCGGGAAGC CAATGACGAA
GTTGAGCGCA TTGGCATTGA ACGCGCGTGG AACGAGATAG AACAGGCTGA TCGTGTATTG
TTTATGGTGG ATGGCACCAC CACCGATGCC ACCGAACCTG CGGCTATCTG GCCAGAGTTT
ATGGCACGCT TACCGGCAAC ACTGCCCATC ACTGTGGTAC GCAATAAAGC GGATATAACA
GGTGAAACGC TGGGGTTGAC CGAAGTGAAT GGTCACTCAC TTATTCGTCT GTCGGCACGC
ACTGGAGAAG GTATTGACCT GCTGCGTGAC CATTTAAAAC AAAGTATGGG CTTTACCAGC
AACACTGAAG GCGGTTTCCT GGCTCGACGT CGCCATTTAC AGGCACTGGA GACTGCCGCC
AGGCATTTGA TACAAGGCCA CGAGCAGTTA GTGAGCGCTT ACGCTGGTGA ATTACTGGCA
GAAGAACTGC GTTTAGCACA ACAATCATTG AGTGAAATTA CCGGTGAATT TAGTTCTGAT
GACTTACTGG GGCGGATTTT TTCCAGTTTC TGTATCGGAA AATGA
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| Protein sequence | MSTTDTIVAQ ATPPGRGGVG ILRVSGRAAS EVAHAVLGKL PKPRYADYLP FKDVDGSTLD
QGIALYFPGP NSFTGEDVLE LQGHGGPVIL DLLLKRILAL PGLRIARPGE FSERAFLNDK
LDLAQAEAIA DLIDASSEQA ARSAVNSLQG AFSARIHQLV EALTHLRIYV EAAIDFPDEE
IDFLSDGKIE GQLNGVMADL EQVRTEARQG SLLREGMKVV IAGRPNAGKS SLLNALAGRE
AAIVTDIAGT TRDVLREHIH IDGMPLHIID TAGLREANDE VERIGIERAW NEIEQADRVL
FMVDGTTTDA TEPAAIWPEF MARLPATLPI TVVRNKADIT GETLGLTEVN GHSLIRLSAR
TGEGIDLLRD HLKQSMGFTS NTEGGFLARR RHLQALETAA RHLIQGHEQL VSAYAGELLA
EELRLAQQSL SEITGEFSSD DLLGRIFSSF CIGK
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