| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_4162 |
|---|
| Symbol | |
|---|
| ID | 6088966 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | + |
|---|
| Start bp | 4592498 |
|---|
| End bp | 4593766 |
|---|
| Gene Length | 1269 bp |
|---|
| Protein Length | 422 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641599261 |
|---|
| Product | integrase family protein |
|---|
| Protein accession | YP_001722874 |
|---|
| Protein GI | 170026369 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.806899 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCAAAAT TTACAGATAT GCAGATCCGC GCATGGATAA AGGCCGGAGA GCGATTCGAA
GGCCGTGCAG ATGGCAACGG GCTATATCTG CGATACAGAG ACGCAGACAG ATCACCAACC
TGGCGATTCC GTTATAAGTT CGCCGGTAAG TCACGCGCCA TGTTAATTGG CTCATACGCT
GAATTGTCCC TATCAAAAGC CAGAGAGACG GTCAAAGCGT TATCAGCTCG AGTATCCCTG
GGCTATGACG TTGCCGGAGA GAAGCAGGAG CGGAAAGCCG AAGCGCTAGC GAAGATGGAA
ACCGAAAAGA ACGCTATGCG GGTTTCAGGG CTTGCCGCTG AATACTTCGA ACGCCAGATC
TTGCCCCGCT GGAAGCACCC AGACATTTTG CGCCGCCGTA TCGACAAAGA TATAAACCCG
CATATTGGCA GCATGAGGGT GGAGGACGTA AAGCCACGTC ACATTGACGA CATGCTAAAA
GCCATTGTTG ACCGTGGAGC ACCAACTATA GCCACGGACG TTCTACGCTG GACTCGTCGC
ATATTCGATT ACGGTATCAA GCGCCACGCA TTAGAAGTCA ATCCTTGCTC AGCCTTTGAG
GTATCCGACG CTGGCGGAAA GGAAGTGAGC CGCGATCGCT GGCTAACTCG TGATGAATTA
ATCCGGTTAT TTCAGGCTAT GCGAACGGCT AAAGGGTTCA GTCGCCAGAA TGAAATCACG
TTTAAGCTGC TATTGGCCTT GTGCGTCCGA AAGATGGAGC TATGCGCCGC CCGTTGGGAA
GAATTCGACC TCGACGCTGC TATATGGCAT TTGCCAGCAG AGCGTAGTAA AAATGGCGAT
GCTATCGATA TTCCATTACC ACCACCAGCG GCTGAGTGGC TTAGAGAGCT TCATACATTT
TCATGCAACA GCGCATGGGT ACTGCCAGCC AGAAAAATGC AAAACAGGAT GATTCCCCAC
ATCCAAGAAA GCACCTTACC CGTAGCATTA GCAAAAGTAC GGGCTGAAAT GCCGGATATT
GAAAACGTTA CTATTCATGA TTTCAGACGC ACTGCTCGCA CACACTTAGC GGCGCTTGGA
GTTGATCCGG TGGTAGCTGA ACGTTGTCTG AATCACCGCA TAAAGGGCGT TGAGGGCATT
TATAACCGAC ACCAATATTT TGATGAGCGT AAGGCAGCAC TGACACAGTG GGCTGCGTTG
CTGGTGGCCC TAGAGCGTGG CGAAGAATAC AACGTAACTC CGATTAAAAA GCGGAAGGTG
ACAATATGA
|
|---|
| Protein sequence | MPKFTDMQIR AWIKAGERFE GRADGNGLYL RYRDADRSPT WRFRYKFAGK SRAMLIGSYA
ELSLSKARET VKALSARVSL GYDVAGEKQE RKAEALAKME TEKNAMRVSG LAAEYFERQI
LPRWKHPDIL RRRIDKDINP HIGSMRVEDV KPRHIDDMLK AIVDRGAPTI ATDVLRWTRR
IFDYGIKRHA LEVNPCSAFE VSDAGGKEVS RDRWLTRDEL IRLFQAMRTA KGFSRQNEIT
FKLLLALCVR KMELCAARWE EFDLDAAIWH LPAERSKNGD AIDIPLPPPA AEWLRELHTF
SCNSAWVLPA RKMQNRMIPH IQESTLPVAL AKVRAEMPDI ENVTIHDFRR TARTHLAALG
VDPVVAERCL NHRIKGVEGI YNRHQYFDER KAALTQWAAL LVALERGEEY NVTPIKKRKV
TI
|
|---|
| |