Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_3916 |
Symbol | |
ID | 6090228 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | - |
Start bp | 4312483 |
End bp | 4313697 |
Gene Length | 1215 bp |
Protein Length | 404 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641599008 |
Product | YscD/HrpQ family type III secretion apparatus protein |
Protein accession | YP_001722634 |
Protein GI | 170026129 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR02500] type III secretion apparatus protein, YscD/HrpQ family |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCACCG TATTCAAGCT TCGCCTGTTA AATGGTGATC TCAATGGTCG TGAGCTGATA TTACCGGAAG GTGAATTTAC ACTGGGGGAG CAGGGGTGTG ATGTTCTGCT GCCTTTATCT GACGGCAATA TAGTGACGCT ATGTGTTAAT GAATATCAGG TAATGATACA GGTGGCGGAG GAGGTTTGGA TTAATGGTGC ACAGCACGAT TTACACACTC CCCTTCCACT GTTGCAATCT ATTGAAATTG CCGGATTGGT ATTCGTTCTG GGTGAACAAA CGGATATTTT GAGTGGAATT AAAGTCACTC ACCGTGCGAG GTTCCCTTTA TTGGTATGGC TAGCTATTGC GATATGTGTC CCCTTATCAC TGCTGTTTGT TTTTTTATTT TGGTTAACCA CTCAGCCTGA GACATTACGT GCTTCGATTC CTGCGGATGT CCCGACGCAA TTAGCCGAAC GCCTGCGCGA ACCCGCTTTA CAGGGAATAA AGGGAACCTG GCTAGCGGAT GGGAGTGTCA CATTAAGTGG GCATTGTGCC TCGTCCTCAA TGATGGAACC ACTGCAACAT TTTTTACTGC GTAACCATAT CGCCTTTCGT AACCAATTGG TGTGTGATGA TCGCTTAATC GCTTCCGTTA GCGATCTATT ACATCAGCAT GGTTACCACG ATATTGAGGT GCGCATCGGT GATGAACCGG GAAATATTGT GATTTATGGT GCCGTTCAAA TGGGTGATCA GTGGTTAACC GTGCAGGACA CGCTGGCGGC GGTCTCAGGG TTGAAAGGTT GGCTGGTGGT TAATGCTCAT TCAGGGCAAA TACAACAACT GGTGGAGCGC TTGAGAGCGG CAGGCTTATT AGGATTCTTA AGCATGACGG AAAGTAATAA AGAGTTGGCC ATCAGTGGTG TGCTGTCATC TGAACAGCAG CAGCAGTTAA AGGAGACATT GGCCGCTTTA TCTCAGCAGC AACCCGGTTT TCCGTCAGTC AGGTATCAGA ATATTCCGGC GTCAGACCGA ACGGATCAAT TTCTTCCGGC AAAGGTCGTG AGCTATGGAG GAAATACCCA GTCGGCATTT GTGCGGTTAG CCAATGGTGG GCGTTTGCAG CAAGGGAGTG TGTTGGCAAA TGGCTATAAA GTGGTTTTTA TTGGGGAACA GGGACTGACG TTATTAAAAG CAAATAATTT AGTACATATC CCCATGGATT TCTAA
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Protein sequence | MTTVFKLRLL NGDLNGRELI LPEGEFTLGE QGCDVLLPLS DGNIVTLCVN EYQVMIQVAE EVWINGAQHD LHTPLPLLQS IEIAGLVFVL GEQTDILSGI KVTHRARFPL LVWLAIAICV PLSLLFVFLF WLTTQPETLR ASIPADVPTQ LAERLREPAL QGIKGTWLAD GSVTLSGHCA SSSMMEPLQH FLLRNHIAFR NQLVCDDRLI ASVSDLLHQH GYHDIEVRIG DEPGNIVIYG AVQMGDQWLT VQDTLAAVSG LKGWLVVNAH SGQIQQLVER LRAAGLLGFL SMTESNKELA ISGVLSSEQQ QQLKETLAAL SQQQPGFPSV RYQNIPASDR TDQFLPAKVV SYGGNTQSAF VRLANGGRLQ QGSVLANGYK VVFIGEQGLT LLKANNLVHI PMDF
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