| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_3115 |
|---|
| Symbol | |
|---|
| ID | 6089053 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | - |
|---|
| Start bp | 3411494 |
|---|
| End bp | 3412087 |
|---|
| Gene Length | 594 bp |
|---|
| Protein Length | 197 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641598193 |
|---|
| Product | Mu Gp45 domain-containing protein |
|---|
| Protein accession | YP_001721839 |
|---|
| Protein GI | 170025334 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4384] Mu-like prophage protein gp45 |
|---|
| TIGRFAM ID | [TIGR01644] phage baseplate assembly protein V |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGAAT CAGGGCAGCT AGCCAAGTTA TACCGGCAAA TAAAAATGAT GATCGGGGTG
GGGCGGGTGA CCGGCAGTCA TGATGGTGGT TCAGTTCAAA CCGTTCAATA CCAAACCCCG
CTGGAAGTCC GTAGTGATAC GCCGAGATTG GCTGAATTTG GTTTTTCGTC CGGGTTACCC
ACCGGTACCG ATGTGGTGAT TGGCTTTCTG GGCGGCGACC GGTCAAGCGC GGTCATCATT
GGTTCCAATC ATCAGTCATT TCGTCATGTT GGGCTAAATT CGGGTGAGAC GGTGATTTAT
TCGCAGTGGG GGCAATACAT CAAGTTAACG GAAGCTGGCA TTATTATTGA GGCCAATAGT
CAGCCGGTCA CAGTCAATAA TGCGACTGAG GTGACGGTTA ATGCCACGGT AAAAGTACGG
CTAAATACCC CGTTACTGGA GGTCAGCGGC GATATTGTCG ATAACGCTGG CAGCAATGGC
ACCACACTGA AAACCCTACG CGAAGCCTAT AACACCCACA ATCACCAACT GAAAAATGTG
CAGGGCGGTA GCTCGACATT AACCAGTGAA GCGACGGGCA AGGTGGTTCA ATGA
|
|---|
| Protein sequence | MSESGQLAKL YRQIKMMIGV GRVTGSHDGG SVQTVQYQTP LEVRSDTPRL AEFGFSSGLP
TGTDVVIGFL GGDRSSAVII GSNHQSFRHV GLNSGETVIY SQWGQYIKLT EAGIIIEANS
QPVTVNNATE VTVNATVKVR LNTPLLEVSG DIVDNAGSNG TTLKTLREAY NTHNHQLKNV
QGGSSTLTSE ATGKVVQ
|
|---|
| |