Gene YPK_3016 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_3016 
Symbol 
ID6090652 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand+ 
Start bp3318681 
End bp3319304 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content52% 
IMG OID641598096 
ProductLPS-assembly lipoprotein RlpB 
Protein accessionYP_001721742 
Protein GI170025237 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2980] Rare lipoprotein B 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.446987 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCGACATC GTATTCTGAC GTTGTTGCTG GGGTTGGCGG TGCTGGTCAC CGCTGGCTGC 
GGTTTTAATC TGCGGGGCAC CACTCAGGTG CCGACTGAGT TGCAAAAATT ATTGCTGGAG 
AGCAGCGATC CCTATGGCCC GTTAGCCAGG TCTATACGTC AACAACTACG TTTAAATAAC 
GTGACTATTG TTGATGACGC CATGCGTAAA GATATACCGA CGCTGCGGAT CATCGGCTCA 
TCCGAAAGCC AAGAGACAGT GTCTATCTTC CGTAACGGTG TCGCGGCCGA GAATCAGTTA 
GTGCTACATG TACAGGCGCA GGTGTTGATT CCGGGCCATG ATATTTACCC ATTGCAGGTC 
AATGTGTTCC GCACATTCTT TGATAACCCG TTAACGGCGT TAGCCAAAGA GGCTGAAGCC 
GAGGTGCTTC GTCAAGAAAT GCGTGAGCAA GCCGCCCAGC AGTTAGTGCG TCAGTTACTG 
ACGGTACATG CGGCAGAAGT TAAAAACACG CAGAAAAATG GTGATAAACC GGTGAGTGAT 
GCCAACGCGG CTCAGGGCTC AACCCCGACA GCCGTCAATG AAACCACTCT CGGCGAACCT 
GCCGTCAGTA CCTCAGCCAA ATGA
 
Protein sequence
MRHRILTLLL GLAVLVTAGC GFNLRGTTQV PTELQKLLLE SSDPYGPLAR SIRQQLRLNN 
VTIVDDAMRK DIPTLRIIGS SESQETVSIF RNGVAAENQL VLHVQAQVLI PGHDIYPLQV 
NVFRTFFDNP LTALAKEAEA EVLRQEMREQ AAQQLVRQLL TVHAAEVKNT QKNGDKPVSD 
ANAAQGSTPT AVNETTLGEP AVSTSAK