| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_3007 |
|---|
| Symbol | |
|---|
| ID | 6090110 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | + |
|---|
| Start bp | 3308171 |
|---|
| End bp | 3308644 |
|---|
| Gene Length | 474 bp |
|---|
| Protein Length | 157 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641598087 |
|---|
| Product | putative metalloprotease |
|---|
| Protein accession | YP_001721733 |
|---|
| Protein GI | 170025228 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0319] Predicted metal-dependent hydrolase |
|---|
| TIGRFAM ID | [TIGR00043] metalloprotein, YbeY/UPF0054 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.997862 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGCCAGG TTATTCTCGA TTTACAAATT GCCTGTGCCG ATAGCCAGGG TTTACCCACA
GAAGGTGATT TTCAACGCTG GCTGGAGGCT GTATTACCGC TATTTCAGCC CGTATCTGAG
GTGACCATCC GGCTGGTTGA TGAGGCTGAA AGTCATGATC TAAATCTGAC TTATCGTGGT
AAAGATAAAT CGACTAACGT ATTGTCTTTT CCTTTCGAAG CCCCACCTGA AATCGAGTTG
CCATTATTAG GCGATTTGAT TATTTGCCGT CAGGTCGTTG AGAAAGAAGC CATTGAACAG
GAAAAGGCGC TGCTCGCTCA TTGGGCGCAT ATGGTTGTTC ACGGCAGTCT CCATCTGCTA
GGGTATGATC ACATCGACGA TGATGAAGCA GAAGAAATGG AGTTGATCGA GATTGAAATC
ATGCACGGTT TGGGTTACCC AGACCCGTAT ATTTCAGAGA AAGACCCCGA CTAA
|
|---|
| Protein sequence | MSQVILDLQI ACADSQGLPT EGDFQRWLEA VLPLFQPVSE VTIRLVDEAE SHDLNLTYRG
KDKSTNVLSF PFEAPPEIEL PLLGDLIICR QVVEKEAIEQ EKALLAHWAH MVVHGSLHLL
GYDHIDDDEA EEMELIEIEI MHGLGYPDPY ISEKDPD
|
|---|
| |