| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_2788 |
|---|
| Symbol | |
|---|
| ID | 6089578 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | + |
|---|
| Start bp | 3078166 |
|---|
| End bp | 3079194 |
|---|
| Gene Length | 1029 bp |
|---|
| Protein Length | 342 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 641597857 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001721518 |
|---|
| Protein GI | 170025013 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4239] ABC-type uncharacterized transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.352071 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGATGA GACTAAGTGC AATTAATCAG GCCCGTTGGG CGCGTTTTCG TCAGAATCGC
CGTGGTTACT GGTCACTGTG GATTTTCCTG ACGCTGTTTG TCATTAGCTT ATTTGCCGAA
TTGATTGCCA ACGATAAACC ATTGCTGGTG AGCTATCAGG GCAAGTTTTA TATGCCTTTT
ATGGTCAATT ACAGTGAGTC AACCTTTGGC GGTGTTTTAA CCACCGCGGC AGATTATCAA
GATCCGTATG TGATTGGGCG TATAAATGAC AGTGGCTGGG CTATCTGGGC ACCTATTCGT
TTTAGTAATA ACACCATTAA TTTCGCCACG GACGTGCCCT TCCCTTCTCC GCCAAGCCGT
ACCAACTTGC TGGGTACTGA TAGTACCGGC GGAGATGTCT TGGCCAAAGT GATCTATGGC
TTTCGTATCT CGCTGTTGTT CGGGCTGACA TTAACCCTGT TTTCCAGTGT GATTGGGATC
TGCGCCGGTG CGGTACAAGG CTATTACGGT GGCAGGGTTG ATCTCTGGGG CCAACGCTTT
ATTGAGGTAT GGTCTGGTAT GCCAACCCTG TTTTTAGTGA TTTTACTGTC GAGCATTGTG
CAGCCCAATT TCTGGTGGCT GCTTGCTATC ACCGTTATTT TTGGCTGGAT GGGGTTGGTG
GGTGTCGTGC GCGCTGAGTT TCTCCGGACC CGCAATTATG ATTATATCCG TGCCGCACGG
GCGATGGGGG TACGTGATCG AACCATCATG ACTCGCCATA TGTTGCCTAA TGCCATGGTG
GCCACACTGA CCTTCTTACC GTTTATTCTG TGTGGCTCCA TTACCACCCT CACCTCACTG
GATTTCCTCG GTTTTGGTTT GCCGATAGGT TCACCATCAC TGGGTGGGCT GCTGTTAGAG
GGGAAAAATA ACCTACAGGC CCCTTGGCTG GGGATCACCG CATTTCTGGT GCTGGCGGTA
CTATTGTCCC TATTGATTTT TATCGGCGAA GCTGTCCGTG ACGCCTTTGA CCCAAGTAAG
GTGTACTGA
|
|---|
| Protein sequence | MMMRLSAINQ ARWARFRQNR RGYWSLWIFL TLFVISLFAE LIANDKPLLV SYQGKFYMPF
MVNYSESTFG GVLTTAADYQ DPYVIGRIND SGWAIWAPIR FSNNTINFAT DVPFPSPPSR
TNLLGTDSTG GDVLAKVIYG FRISLLFGLT LTLFSSVIGI CAGAVQGYYG GRVDLWGQRF
IEVWSGMPTL FLVILLSSIV QPNFWWLLAI TVIFGWMGLV GVVRAEFLRT RNYDYIRAAR
AMGVRDRTIM TRHMLPNAMV ATLTFLPFIL CGSITTLTSL DFLGFGLPIG SPSLGGLLLE
GKNNLQAPWL GITAFLVLAV LLSLLIFIGE AVRDAFDPSK VY
|
|---|
| |