Gene YPK_2540 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_2540 
Symbol 
ID6088901 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp2783824 
End bp2784903 
Gene Length1080 bp 
Protein Length359 aa 
Translation table11 
GC content53% 
IMG OID641597608 
Productperiplasmic binding protein 
Protein accessionYP_001721270 
Protein GI170024765 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0614] ABC-type Fe3+-hydroxamate transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.501058 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATAAAA CGCGAACCTG CACCACATTA GCCCCCCGCT GGTTAGGCGA TATTTCTTTT 
ATATTAGCGG GTCTACTTGC GCTGTTTTTT TTGCTTTCTG TCGGCGATAG CCAGGCCGAA
ACCGGCGCTG TGCACACCAC GCAAGCAAAC GGTTTCCCAC GGAAAATCAC CAGCGCACTT
GGCACGGCGG TCATTGAGCG TCCACCTCAG CGTATTGTGG CCCTCGGCGC AGGCGCAGAA
GACATTGTGC TGGCATTGGG CAAGATCCCG GTGGGTATTG AATCCCACAC ATGGGGAGGT
GATAAGCAAG GTTATTTCCC TTGGTTCAGA CAAGCATTAG AACAACGGGG CGAGCCGCTG
CCTCAGGTGC TTAATATGTA TCCAGAGTTG GATATTGAGC AGTTAATCAA TCTAAAGCCC
GATGTGATTA TCGCGACTCA GTCAGGGATG AGCCAAAGCC TGTACAACCA ACTATCTCGC
TTCGCGCCCG TCGTGGCTTA TCCCGGCCGG CCGTGGCTGA CCAGCCTCAC ACAACAAGTT
GAATTAATCG GCCAAACACT CGGAGAAGAG TCACAAACCT ACCCGTTATT GCAAGAGTTA
AAAAACACCT TATCCGCTGC GGGCCAAACG GTTCCGGGGA TTAAAAACCT GCGTTTTGCC
TACATTAAAG CGGCCAGTAG CAATACCAAC TTGTCGGTGT ATGTCGCAGG CGACCCACGG
GTTGACACCT TAATCGCCAC GGGTATGCAA CTCGCCCCAT CCATCAAAGA CCTCATGGCA
TCGCGAGGCA GCTTTGCTGC TAATCTTGGG CTGGAAAATG CAGATCAGTT GGATGATGCC
GATATTTTAG TCACCTGGTA TAGCAGCGAG CAAGAACGGC AGCGGGTTGA AGAAAAGCCC
TTATTCAACG CGATGGCTGC CGTGCAACGC GGCGGGTATA TCCCGCTGAC CGACCAAGCG
ATTGTCATGG CGATGTCCTA TGGCACACCG CTGAGCGTTC AGTGGGGGTT GCAACGCTTT
ATGCCATTGC TCGCAGAAAA AGCGCGCCAT TTGGCTGATA CCAAAGAGAC ACTGCCATGA
 
Protein sequence
MNKTRTCTTL APRWLGDISF ILAGLLALFF LLSVGDSQAE TGAVHTTQAN GFPRKITSAL 
GTAVIERPPQ RIVALGAGAE DIVLALGKIP VGIESHTWGG DKQGYFPWFR QALEQRGEPL
PQVLNMYPEL DIEQLINLKP DVIIATQSGM SQSLYNQLSR FAPVVAYPGR PWLTSLTQQV
ELIGQTLGEE SQTYPLLQEL KNTLSAAGQT VPGIKNLRFA YIKAASSNTN LSVYVAGDPR
VDTLIATGMQ LAPSIKDLMA SRGSFAANLG LENADQLDDA DILVTWYSSE QERQRVEEKP
LFNAMAAVQR GGYIPLTDQA IVMAMSYGTP LSVQWGLQRF MPLLAEKARH LADTKETLP