Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_2241 |
Symbol | hmsH |
ID | 6088562 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | - |
Start bp | 2486293 |
End bp | 2488767 |
Gene Length | 2475 bp |
Protein Length | 824 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641597306 |
Product | outer membrane protein |
Protein accession | YP_001720975 |
Protein GI | 170024470 |
COG category | |
COG ID | |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTATAACG CATTTACAAC ACTACTGCGC CCGTTGCACT GGCACAGAAT GACTTTATTA GCGCTATTTA TTTCTGGCTT TGTCGTTAAT CCTGCTATGG CGGATACGCA GTATGACTCA TTAATTATTC GTGCCAGAGC CGGTGATACT GCGCCAGTCT TGGACTATTT ACAGGAAGAA TCTAAAGCGG GTCCATTGCA GAGTGGGCAG GTTGATGACT GGCTGCAAAT TGCAGGTTGG GCAGGGCGCG ATCAAGAAGT GATTGATGTT TATGAACGAT ATCAATCTTC CATGAATATC TCTTCCAGAG GTTTGGCTTC TGCCGCTCGA GCTTACCGCA ACGAAAAGCG TTGGGATCAG GCTTTGGCCT TGTGGCAAAG CAGCTTAAAG AAAGACCCCA CCAATCCTGA TCTTATCAGC GGTATGATCA TGACTCAGGC TGATGCTGGA CGCGGTGGGG TTGTTTTAAA ACAGGCAACA GAGTTAGCCG AGCGTGATCC CACGGTACAA AATTACATGA CGCTGTCTTA TCTAAACCGG GCTACTGACC GTAATTATGA TGCTTTGCAA GCCTCCAGCG AAGCGGTGCG ATTGGCACCA ACGTCTGAAG AAGTGCTCAA AAATCATCTC GAAATCTTAC AGAGAAACCG TATTGTTGAG CCAGCGTTAC GGCTTGCTAA AGAGAACCCA AATTTGGTTT CTGCTGAGCA TTATCGCCAA CTTGAGCGCG ATGCTGCTGC GGAACAAGTT CGGATGGCGG TGTTGCCAAC GCGCAGCGAA ACCGAGCGTT TTGACATAGC GGATAAGGCG TTAGCGGATT ATCAGAATTT ATTGACCCGT TGGGGCAAAG ATCCAGAGGC ACAGGCTGAC TACCAACGCG CACGCATTGA CCGATTAGGG GCGTTATTGG TCCGTCATCA GACGGCTGAT CTGATCAAAG AGTATGAAGC GATGGAGGCT GAGGGCTATA AAATGCCTGA TTATGCCCGC CGTTGGGCGG CTTCTGCCTA TATTGACCGA AGGTTGCCGG AAAAAGCAGC GCCTATCCTC TCCAGCCTCT ATTATTCAGA CGGTAAAACC TTCCGTAACA GCGACGATTT GCTTGATGCC GATGATCTTT ACTATTCACT GAATGAAAGC GAACAACTTG ATAAAGCCTA CCAATTTGCG GTCAATTATA GCGAGCAAAC GCCGTATCAG GTTGGGGTTT ATGGCCTGCC GGGCAAAGAA CCGAATGATG ATTGGATTGA AGGCCAAACG CTATTGGTTC AATCATTGGT GGCATTGAAT GATCTGCCCA CCGCACAAAA AAAATTGGAA GATTTATCCA GTACTGCACC CGCTAATCAG AATTTAAGGA TCGCATTAGC CAGTATTTAT CTGGCCCGGG ATTTACCGCG TAAAGCGGAG CAAGAATTGA AGGCCGTGGA ATCATTAGCA CCACGCAGCC TTATTCTGGA ACGTGCGCAG GCTGAAACTG CGATGGCGCT ACAAGAATGG CATCAGATGG AGTTACTGAC TGATGATGTG ATTAGCCGTT CCCCAGAAGA TATCCCCTCT CAAGAATTAG ATCGCCAACG TAAAGTCCAT AACATGTATG AACTACGGGT GAGTGGTAAC CGCGTTATCT CCTCCAACAG CCCGGTGAGC GGCAATAAAG ATTATGGGGT CGAAACTCTC CTTTACAGCC CACCTATTGC AGAGAATTGG CGCGTATTTG GTGGAGGCAG TTATAACAAT GGGCAGTTTG AAGAGGGGAC GGGGATTAGC CGGATTTTGC GCTTAGGTGG TGAATGGACC TCCCGTGACC ATTGGGTTGA AGGGGAAATT TCCAATCAGA ATTATGGCAA TGGCAATGGC AATAAAGTCG GGGCCCGTTT ATCAACCTGG TACGACCTTA ATGACCACTG GCGTGTAGGG GGGCAGGTTG AACGTTTAGC TAAAGACACA CCACTACGGG CACTGAAGAA TAAAGTGACC GCGAATAGCG CGTCTGCTTA TGTTTTCTGG AAAGCAGATG ATAAGCGTGA TGCTGAACTT AGCGTGACGC CGTCGCGTTT TTCTGACGGT AACAACCGTT GGGAATATGA ATTTAACGGG CGTCAGCGTA TCTGGACTGG GCCTTACCTA ACGGCAGATT TTAATCTGGG GTTGGCAGCC AGCCAAAACA GTAAAGAAGA TGTGATTTAC TACAACCCGA AACGTGATTT TGCTTACGTT CCGGCAGTGA CTCTCAATCA CATTATGTAC CGGCGGTACA AAACCATCTG GAGCCAGCAA GTCCAACTGG GTGTGGGAGG GTACTGGGAG AAAAATTACG GTAATGGCTT GGTGACCACG GCGGGCTATG GCCAACGTGT TCAATGGAAT GATGTTATCG ATACCGGTGT TGCTGTGGTT TATGACAAGC GTCCTTACGA TGGTAAACGT GAGCACGATG TTACGCTTTC TTTCGATTTA AATTATCGTT TTTAA
|
Protein sequence | MYNAFTTLLR PLHWHRMTLL ALFISGFVVN PAMADTQYDS LIIRARAGDT APVLDYLQEE SKAGPLQSGQ VDDWLQIAGW AGRDQEVIDV YERYQSSMNI SSRGLASAAR AYRNEKRWDQ ALALWQSSLK KDPTNPDLIS GMIMTQADAG RGGVVLKQAT ELAERDPTVQ NYMTLSYLNR ATDRNYDALQ ASSEAVRLAP TSEEVLKNHL EILQRNRIVE PALRLAKENP NLVSAEHYRQ LERDAAAEQV RMAVLPTRSE TERFDIADKA LADYQNLLTR WGKDPEAQAD YQRARIDRLG ALLVRHQTAD LIKEYEAMEA EGYKMPDYAR RWAASAYIDR RLPEKAAPIL SSLYYSDGKT FRNSDDLLDA DDLYYSLNES EQLDKAYQFA VNYSEQTPYQ VGVYGLPGKE PNDDWIEGQT LLVQSLVALN DLPTAQKKLE DLSSTAPANQ NLRIALASIY LARDLPRKAE QELKAVESLA PRSLILERAQ AETAMALQEW HQMELLTDDV ISRSPEDIPS QELDRQRKVH NMYELRVSGN RVISSNSPVS GNKDYGVETL LYSPPIAENW RVFGGGSYNN GQFEEGTGIS RILRLGGEWT SRDHWVEGEI SNQNYGNGNG NKVGARLSTW YDLNDHWRVG GQVERLAKDT PLRALKNKVT ANSASAYVFW KADDKRDAEL SVTPSRFSDG NNRWEYEFNG RQRIWTGPYL TADFNLGLAA SQNSKEDVIY YNPKRDFAYV PAVTLNHIMY RRYKTIWSQQ VQLGVGGYWE KNYGNGLVTT AGYGQRVQWN DVIDTGVAVV YDKRPYDGKR EHDVTLSFDL NYRF
|
| |