Gene YPK_1952 details

Gene Information

• Locus tag: YPK_1952
• ID: 6089515
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis YPIII
• Kingdom: Bacteria
• Replicon accession: NC_010465
• Strand: -
• Start bp: 2168429
• End bp: 2170468
• Gene Length: 2040 bp
• Protein Length: 679 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 641597021
• Product: putative virulence factor
• Protein accession: YP_001720694
• Protein GI: 170024189
• COG category: [S] Function unknown
• COG ID: [COG4458] Uncharacterized protein conserved in bacteria, putative virulence factor

Plasmid Coverage information

• Num covering plasmid clones: 24
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGCTGGATT GCCCTCAGGA AAATCCAGCT TATTCGTTGG ATGAGCAACA GATTACCGAA 
CATCTACGGC AGTTGATGAT GCACAGGCGG CCAATCATTA ACGCTGGAAT CAATAGCGAT 
GATGTGATTG CACTTTGGGA CTCCCTGGCC CACCACGACA CACAACGCCA GAAAGAACTG 
GCGACTCACT TCTGGCCTAC CGCGATTGAA CTGGCACCGT ATCTGAGTAT TGATGACCGG 
GCCAAATTAT TTTCGTTATT GTGGGGAGAA AACGATCCAC TCACTGACGC TTATCGCCAT 
TTTTCCTATA TTTTGCAGCA CCTTAGCGGC GCACAGCAAT TATTAGCACC GCTAAGTGTT 
TTGGTTGACG ATACCCTGTT ACCTACCAAT GGTGTCATGA ATATTGCCAC GCTTGGTGAC 
TTGAATACAC CTGCAGATAA CCCTATTCAA GTGCTTCCCT TGATCAGCGG TCATACCGCG 
AAATACGTGA CACTGTCACA AGCGGAATTG ACGCTGTTAG CGGTGGAACT GAAGATCCCA 
CTCGATAAAC CCGCGCGTGA AAGTGCATTT GAATCCGTTG AATTGCTTAA TTTTCCTGAT 
GCTCGCGGTT CACAAACTAT CCCGGCATTA ATGGAAAACG CCGCTTATCC GCTGGCCTCG 
CTACTGTCAC AGGCTAAAAA TGCCTATTTA CTCGAACGTT ATACCAACCA ACAGCAAATC 
AACCTGTTAT TGGTGTGTAC CGCCACCGAT CAGCGTTCAG AGATAAAAAG TACCAGCAAG 
GCATTGGATT ATTGGGTTAA ACAGACTCAG GGAGAGAGCG TTCAGATACG CTCGCGTCGT 
AATCCGGGTT TAATCTGGGC CTTAACGCCC CATGATCAGC GCATTACCGC GAATCTACCT 
CTCTCCACCC CGACAGACGC CCAAACGCAT GACGCGAATA TCAAAAATTA CGATGAAGCG 
GTACAACGCT ATGTTGGTAA TCCCGGTGAC AGTTGGGGAA CCCTATTGGC ATTGGATGCA 
CGTGGGGTTG AACGGATGAT CTCGTACCTA TCGAAAGAAA TCCTTCGGGA TATCAAATCA 
GAACGTCTAA CCGAACAACT TCACGAGTTA CAACGGGAAC TGACCAATAA TCTGTTCGCG 
GGTTGGTATC AACCTTCGGT TACGGACGAA CGACAGCAAA AACAACGTAT TGTAGAAATA 
TTACTTAAAG CGTTGCAAAC CCGTACTGGG GTACATGGTG AATTGTTGGA GCAATTACTT 
CCTTCCCGCG ATGAACTACG CCGCCTTTAT CTGCAACAGC ACCTTTATCT ATCACCCCGC 
CTTTATCAAC AAGAGAAAAA AGGGGTTGCG GATTTTTTCA CACCACTCGC CAGCACTGAA 
CCTTTCAGTA TCGGTATCGA TATCGATCTG TTTAGTGACC TTCCCACTCC CACTGAGCCA 
TCGCTGACAC CACAAGCCAG ACATGATAAC GATGAAGCGG AGTATGCCGC TCATGTGCAT 
TATTATTGGA TAAATCATCT ACGCCAACTG CCCGATAATA CTGCGCTACT TGAATTACTG 
GGCGTCACTA AACCCACGAT AGAACTGCTG GTCGCGGAAT TCATCACTGC CAGTATTCGG 
CTGGATATTG CTAGGAATTT ACGACAGGCA CTGGCTGATA ACGAACCGGC GGATCTGCAT 
CGTGCAGCCA AAGCGGACCG TCAGGTTTCT CGTGCGCTCA CTGTACTCGG TGATTTCATT 
GCCTGGTTAG GTTTTTTGCA AATCAGCGAA GATAAGCGCC CGGATAGCCG CATCAACCGA 
GGGTATAAAA TTTTTGCCCA GCCCCCTAAA TCAGTATCAA CTTTAGGGGT CTCTCACCGG 
TTAACGCAAC TGGCATTAAC CCCAACCAAC AGTACCGCAT TTTATATCTA TGATTGGTTA 
GTGGGTTTGG GTGAAATGAT TATTCAAAAC GTGGGATATT CAGCCAGTAA TGAGATAAGC 
CCGGCACAGC GGCAACAACT GGCGGCAATA TTATCGGTGA TAAAACCCGC AAATGATTAA 

 

Protein sequence

MLDCPQENPA YSLDEQQITE HLRQLMMHRR PIINAGINSD DVIALWDSLA HHDTQRQKEL 
ATHFWPTAIE LAPYLSIDDR AKLFSLLWGE NDPLTDAYRH FSYILQHLSG AQQLLAPLSV 
LVDDTLLPTN GVMNIATLGD LNTPADNPIQ VLPLISGHTA KYVTLSQAEL TLLAVELKIP 
LDKPARESAF ESVELLNFPD ARGSQTIPAL MENAAYPLAS LLSQAKNAYL LERYTNQQQI 
NLLLVCTATD QRSEIKSTSK ALDYWVKQTQ GESVQIRSRR NPGLIWALTP HDQRITANLP 
LSTPTDAQTH DANIKNYDEA VQRYVGNPGD SWGTLLALDA RGVERMISYL SKEILRDIKS 
ERLTEQLHEL QRELTNNLFA GWYQPSVTDE RQQKQRIVEI LLKALQTRTG VHGELLEQLL 
PSRDELRRLY LQQHLYLSPR LYQQEKKGVA DFFTPLASTE PFSIGIDIDL FSDLPTPTEP 
SLTPQARHDN DEAEYAAHVH YYWINHLRQL PDNTALLELL GVTKPTIELL VAEFITASIR 
LDIARNLRQA LADNEPADLH RAAKADRQVS RALTVLGDFI AWLGFLQISE DKRPDSRINR 
GYKIFAQPPK SVSTLGVSHR LTQLALTPTN STAFYIYDWL VGLGEMIIQN VGYSASNEIS 
PAQRQQLAAI LSVIKPAND