Gene YPK_1422 details

Gene Information

• Locus tag: YPK_1422
• ID: 6091249
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis YPIII
• Kingdom: Bacteria
• Replicon accession: NC_010465
• Strand: -
• Start bp: 1570010
• End bp: 1572046
• Gene Length: 2037 bp
• Protein Length: 678 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 641596486
• Product: ABC transporter related
• Protein accession: YP_001720169
• Protein GI: 170023664
• COG category: [V] Defense mechanisms
• COG ID: [COG1136] ABC-type antimicrobial peptide transport system, ATPase component

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.155076
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACAGGAC CACAACAAGG TAAAATTTTG CTCCGGCTCG AAAATGTCAG TCGTGAATTT 
ATAACGGGCG AACAGACCGT CCGCGTGCTG AATAATATCA ATTTAACCCT CCACAGCGGA 
GAAATGGTGG CGATTGTCGG CACATCCGGT TCAGGCAAAT CAACACTAAT GAATATTCTC 
GGCTGTCTGG ATAAACCCAG TGCTGGTGAA TATTGGGTAG CGGGACGTAT CCCTCAGTAT 
TTGGGCAGTG ATGCTCTCGC TGAACTGCGT CGCGAACACT TTGGCTTTAT TTTTCAGCGT 
TACCACTTAC TGAACGATTT AAGTGCGCGC GAAAATGTCG AAATCCCAGC GATTTACGCA 
GGCATTGATC GTGAAGAACG TCGTAAACGG GCGGTCAATC TGCTCTCACG TATTGGATTG 
GCTGAACGGC TGGACTATCG GCCCAGCCAG CTCTCCGGGG GGCAACAGCA GCGGGTCAGT 
ATCGCCAGGG CCTTGATGAA TGGCGGTGAC GTTATTCTGG CAGATGAACC TACTGGGGCG 
CTTGACACCC ACAGCGGCAA CGAAGTCTTA AATATCCTTA AGGACTTGCA CCAACAGGGT 
CATACCGTGG TGATTGTCAC CCACGATATG TCGATTGCAG AACATGCTCA ACGCATTATT 
GAACTCAAAG ACGGCGAAAT TATCGCTGAT CGGCCAAGGG ATCACGCACA AGAAAAGCCA 
AAAATGGTCG ATATCCCTTC TGTAATCGAT ATCCCTTCTA TGGACGAGAA AATATCTACG 
GGAGCACAAC AAGAGACCGA AATTGCCCGC AAACCGCTCC TGACACGTTG GAAAGTACAG 
TATGACCGCC TACACGAGGC GTTCAAAATG GCAATACTGG CGATGGCGGC ACAGCGCCTA 
CGCACCGCCC TAACCATGCT AGGTATTATT ATTGGTATTG CATCGGTGGT CTCGGTCGTC 
GCTCTGGGAA AAGGATCGCA ACAACAGGTT CTGGCTAATA TCAATGCGAT GGGGACCAGT 
ACACTGGAAA TTTTTCCCGG TAAAGATTTT GGCGATATGC GCTCCGCGGC GATCCATACT 
TTGCGGGATA CCGATGCCGA TGTGCTGGCC CAGCAAGGGT ATATTCATAG CGTCACCCCT 
ACCGTTTCGA CCAGCGTGAC ACTGCGCTAT GGCAATAAAT CGGTCAGTGG CACAGTGAAT 
GGTGTGGGTG AGCAATATTT TTTGGTTCGC GGTTACACAA TAGCTCAGGG GATGGCATTT 
ACCCGCACCA GTGTTAACGA CTTGATGCAA GAAGCCGTTA TTGACGAAAA CACCCGCGAT 
AAACTCTTCC CCAACGGGGA AACGCCATTA GGGAAAGTGA TCCTGCTTGG TTCCCTGCCC 
TGCCGGGTAA TTGGTGTGGC GGCCAAGAAA CAGAGCGGGT TTGGCAGTGA TGAAAATCTG 
AATGTTTGGA TCCCTTATAC TACGGCGATG AAACGGATGC TCGGGCAATC CTATCTGAAA 
AGTATCACGG TGCGAGTTAA CGATGATATT GATCTGGCGA ATGCGGAGCA AGGCGTGATC 
AAGCTACTGA GCCAACGCCA CGGCACCCAA GATTTTTTCG TGATGAATAC GGACAGTATT 
CGCCAGACCA TTCAAGCAAC CACATCAACG ATGACGTTAC TGGTATCCAT GATTGCGGTT 
ATTTCATTGA TCGTCGGTGG TATTGGCGTG ATGAATATCA TGTTGGTCTC AGTGACCGAA 
CGTACCAAAG AGATTGGTGT ACGCATGGCT GTCGGTGCAC GGGCCAGCGA TATTATGCAG 
CAGTTTTTAA TTGAAGCTGT CTTGGTCTGT TTGCTAGGGG GTAGCCTCGG TGTCGCCTTA 
TCGTTAGGGA TCGGGCTATT ATTCAGCCTG TTTAGCAGCA ACTTTTCAAT GGTTTACTCC 
GCGGCCTCGA TTATTACCGC TTTTGTTTGT TCCAGCTTGA TTGGGGTCAT TTTTGGTTTC 
TTCCCCGCGA AAAGAGCTGC GGAGATGGAC CCCATTAGGG CGTTAGAACG GGAGTAG 

 

Protein sequence

MTGPQQGKIL LRLENVSREF ITGEQTVRVL NNINLTLHSG EMVAIVGTSG SGKSTLMNIL 
GCLDKPSAGE YWVAGRIPQY LGSDALAELR REHFGFIFQR YHLLNDLSAR ENVEIPAIYA 
GIDREERRKR AVNLLSRIGL AERLDYRPSQ LSGGQQQRVS IARALMNGGD VILADEPTGA 
LDTHSGNEVL NILKDLHQQG HTVVIVTHDM SIAEHAQRII ELKDGEIIAD RPRDHAQEKP 
KMVDIPSVID IPSMDEKIST GAQQETEIAR KPLLTRWKVQ YDRLHEAFKM AILAMAAQRL 
RTALTMLGII IGIASVVSVV ALGKGSQQQV LANINAMGTS TLEIFPGKDF GDMRSAAIHT 
LRDTDADVLA QQGYIHSVTP TVSTSVTLRY GNKSVSGTVN GVGEQYFLVR GYTIAQGMAF 
TRTSVNDLMQ EAVIDENTRD KLFPNGETPL GKVILLGSLP CRVIGVAAKK QSGFGSDENL 
NVWIPYTTAM KRMLGQSYLK SITVRVNDDI DLANAEQGVI KLLSQRHGTQ DFFVMNTDSI 
RQTIQATTST MTLLVSMIAV ISLIVGGIGV MNIMLVSVTE RTKEIGVRMA VGARASDIMQ 
QFLIEAVLVC LLGGSLGVAL SLGIGLLFSL FSSNFSMVYS AASIITAFVC SSLIGVIFGF 
FPAKRAAEMD PIRALERE