Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_1271 |
Symbol | |
ID | 6087910 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | + |
Start bp | 1399531 |
End bp | 1400205 |
Gene Length | 675 bp |
Protein Length | 224 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 641596339 |
Product | hypothetical protein |
Protein accession | YP_001720022 |
Protein GI | 170023517 |
COG category | [R] General function prediction only |
COG ID | [COG3683] ABC-type uncharacterized transport system, periplasmic component |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.00860281 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGCTATG TGTTACATTA TAACGGTTTT ATTACAGTCA GCCGGCTGAT AACCTTGTTA TTAACCGGGG CCGCAATGAT TTATAGCCAA TTGGCTCAAG CGCACCCCCA CAGTTTTATT GATATGAAAA CCACTTTCAT CAATGAAAAA CAGATGCTGG TGGGAATGAA AATGGTATGG ACCATGGATG AAATAACCTC TTCTGACCTG TTGTATGACG CAGAGAATGC CAAAAGTGAC TCTGAAATCT GGAAGAAACT GGCCGCAGAA GTGATGGCTA ATGTGCTGGG GCAGCACTAT TTCACCGATA TATACCGTGA TGGCCAACCG GTGAAATATA AAAATTTGCC AACAGAATAT CATTTATCCC GTCAGGGGCA TCAGGCGGTA CTCTCATTCG TTTTACCGTT GGCTGAGCCG CAGCCATTAG TCGGTAAGCC TTTTATTATC TCAACCTATG ACCCGACTTA TTTTGTCGAT ATGGCCTATG CGGATCAAAA AGCGCTCAGT CTATCGGCTG AAATGGAAAA AAACTGCAAA CTCACTTTGA TGACTCCCAA CCCAGACGCA TCGCTACAGG CTTATGCGCT GTCATTGGAT AAAAGTGATT CACCAGGAGA CGATATGGAA CTTGGAAAAC AATTTGCCCA ACAAGTGACG CTTCAATGTC AGTAG
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Protein sequence | MRYVLHYNGF ITVSRLITLL LTGAAMIYSQ LAQAHPHSFI DMKTTFINEK QMLVGMKMVW TMDEITSSDL LYDAENAKSD SEIWKKLAAE VMANVLGQHY FTDIYRDGQP VKYKNLPTEY HLSRQGHQAV LSFVLPLAEP QPLVGKPFII STYDPTYFVD MAYADQKALS LSAEMEKNCK LTLMTPNPDA SLQAYALSLD KSDSPGDDME LGKQFAQQVT LQCQ
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