Gene YPK_1126 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_1126 
Symbol 
ID6089996 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp1265797 
End bp1266765 
Gene Length969 bp 
Protein Length322 aa 
Translation table11 
GC content51% 
IMG OID641596194 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_001719877 
Protein GI170023372 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.0398727 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGGGGA TCTCGCTGTT TACTCTGCGC TTAATTTGCC TGCTGCTGGT CACCGCAGCC 
GGTACTTTTA CATTGCTGAG TTTTTCCCCT GTTGACCCTA TACGTGCCTA TATTGGTAGC
GATTTACTGC ATGTGCCGCC AGAGCAATAC CCACTGATTG CGGCTCGTTG GGGGCTGGAT
TTACCTTTGT GGCAACGTTT TTTGCATTGG TTTACTCAAG TGCTCCAAGG GGATTTTGGT
TACTCGATGC TGTATAACGC GCCGGTTTCT CAGGTGATAG GTGAGCGTTT TGCTACCTCG
TTTGCGTTAT TGGTCTCGGC CTGGCTATTT TCGGGAATTG TCGGGTTGCT ATTGGGGTTG
ACCGCTGGGC GCTATCTCAA CCGTTGGCCT GATCGTCTGA TTTCAACGTT GTCCTATTTA
TTGGCATCGT TGCCCACCTT TTGGATCGGT CTATTGTTGT TGTCGTTATT TGCGGTGAAG
CTCAATTGGG CCCCCATTTG CTGTGCATGG ACGCCAGGGA GTCAGGCCGA GACCGCCAGT
TGGGGGGATA AGCTTCACCA CCTGATTTTA CCGATGCTAG CGCTGGGGTT ACTGGGGGTT
GGGAACATTG CACTGCATAC CCGTGCCAGA GTTGCTGAAG TGATGAATAG CGAATTTATT
CGCTATGCAC AAGCACAGGG GGATAAAGGC TGGCCTTTGG TGAACTTCCA TATTTTACGC
CATGCCATTA CACCCGCGCT TTGCCTGCAA TTCGCTTCAG TTGGCGAATT ACTGGGGGGG
TCTTTATTGG CCGAAAAAGT GTTCGCCTAT CCCGGTTTGG GGCAGGCGAC GATTGATGCC
GGGTTGCATG GTGACATTCC ACTCTTGATG GGAATAGTGA TGTTCTGCGC CATATTGGTC
TTTTGCGGTA ATAGCATTGC GAATGCCTTG TTACACCGTT TGAACCGGGG GGCTGCGCGG
CAATTATGA
 
Protein sequence
MKGISLFTLR LICLLLVTAA GTFTLLSFSP VDPIRAYIGS DLLHVPPEQY PLIAARWGLD 
LPLWQRFLHW FTQVLQGDFG YSMLYNAPVS QVIGERFATS FALLVSAWLF SGIVGLLLGL
TAGRYLNRWP DRLISTLSYL LASLPTFWIG LLLLSLFAVK LNWAPICCAW TPGSQAETAS
WGDKLHHLIL PMLALGLLGV GNIALHTRAR VAEVMNSEFI RYAQAQGDKG WPLVNFHILR
HAITPALCLQ FASVGELLGG SLLAEKVFAY PGLGQATIDA GLHGDIPLLM GIVMFCAILV
FCGNSIANAL LHRLNRGAAR QL