| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_1081 |
|---|
| Symbol | dnaE |
|---|
| ID | 6090586 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | + |
|---|
| Start bp | 1219602 |
|---|
| End bp | 1223117 |
|---|
| Gene Length | 3516 bp |
|---|
| Protein Length | 1171 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641596147 |
|---|
| Product | DNA polymerase III subunit alpha |
|---|
| Protein accession | YP_001719835 |
|---|
| Protein GI | 170023330 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0587] DNA polymerase III, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.990862 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTCAAT CCACTCATTT CTGGTATCTG GATATGGCCG AACCTCGTTT TGTCCACCTG
CGTGTTCATA GCGATTATTC CATGATCGAT GGATTAGCTA AGATTGGACC TTTGGTGAAA
AGAGCTGCTG CATTAGGTAT GCCTGCTCTG GCTATTACCG ATTTTACTAA CCTCTGTGGC
CTGGTGAAAT TCTACGGCAG CGCGCATGGT GCGGGGATTA AACCCATCAT CGGTGCTGAC
TTCTACGTAC AAAGTGAAAT ACTGGGTGAT GAATTAGCTC ACCTCACGGT TTTGGCTCGC
AATAATGAAG GTTATCAAAA TCTGACTTTA TTGATCTCAG AAGCCTACCA ACGGGGTTAT
GGCGCTGCGG GTCCTATCAT TGATCGCGAT TGGCTGATCA AACATAAAGA AGGACTCATT
CTGCTGTCTG GTGGCCGAAT GGGGGATGTA GGCAAATTTC TGCTACGGGG TAACCAGGTT
CAGGTTGATC AATGTCTCGC CTTTTATCAG GAACACTTTC CAGACTGCTA TTACCTCGAA
CTTATTCGAA CCGGGCGTCC AGACGAAGAA AACTATCTTC ATGCTGCCGT GGCATTGGCC
ACTGAGCGTG GTTTACCTGT CGTTGCGACC AATGATGTGC GTTTTATTGA TGAATCGGAT
TTTGATGCCC ATGAAATCCG TGTCGCTATC CATGATGGTT TTACATTGGT CGATCCTAAA
CGGCCGAAGA ATTACAGCCC TCAGCAGTTT ATGCGCGATG AAGAACAGAT GTGTGAGCTG
TTCGCTGATA TTCCAGAAGC GTTGATCAAC AGCGTTGAGA TAGCCAAACG CTGTAATGTC
ACTATTCGCC TTGGGGAATA TTTCTTACCG CAGTTCCCCA CAGGGGAGAT GAGTACAGAA
GATTTTCTGG TAGAAAAAGC CAAACAAGGT TTGGAAGAAC GTTTGGAATT TCTGTTTCCG
GACCCTGAGG TTAGGCTGCA AAAACGGCCA GAATATGATG AACGTCTGGA TATCGAGCTC
AAAGTTATCA ACCAAATGGG CTTCCCTGGT TACTTCCTGA TTGTAATGGA GTTTATCCAG
TGGTCGAAAG ATAACGGCGT ACCGGTGGGG CCGGGGCGTG GCTCTGGTGC AGGCTCATTG
GTGGCTTATG CCCTGAAAAT TACTGATATT GACCCACTGG AATTTGATCT ACTGTTCGAG
CGCTTCCTTA ATCCGGAACG TGTATCGATG CCTGACTTCG ACGTTGACTT CTGTATGGAG
AAACGTGATC TGGTGATCGA ACACGTGGCG GAAATGTATG GCCGCGATGC GGTTTCCCAG
ATAATTACCT TCGGTACCAT GGCGGCTAAA GCGGTCATCC GCGATGTCGG CCGTGTATTA
GGCCATCCCT ATGGCTTTGT TGATCGGATC TCAAAATTAA TCCCACTCGA TCCGGGGATG
ACACTGGAAA AAGCGTTTGC AGCGGAGCCA CAGCTAGCTG AAATTTATGA AGCTGATGAA
GAGGTCAGGG CGCTAATTGA TATGGCGCGT AAGCTGGAAG GAGTAACGCG AAACGCCGGG
AAACATGCTG GAGGCGTGGT TATTGCCCCC ACTAAGATTA CCGATTTTGC CCCACTCTAT
TGTGATGCGG AAGGCAATAA CCCAGTTACG CAGTTTGATA AAAATGATGT GGAATATGCT
GGGCTGGTGA AGTTTGACTT CCTCGGTCTA CGTACACTAA CCATCATTAA TTGGGCGTTG
GAGATGATTA ACGTCCGGCG CGCTAAAACT GGATTGGAAC CCATTGATAT CGCCTCTATT
CCGCTGGAGG ATAAAAAAAG CTTCGATATG CTGCAACGTT CGGAAACGAC AGCAGTATTC
CAGCTGGAAT CCAGAGGGAT GAAAGATTTG ATCAAGCGCC TGAAGCCCGA CTGCTTCGAG
GACATGATCG CCTTGGTGGC GTTATTTCGT CCCGGTCCGT TACAATCAGG GATGGTTGAT
AACTTTATTG ACCGTAAACA CGGCCGAGAA GCGATATCTT ACCCAGATAT TGAGTGGCAA
CATGAATCCT TGAAACCTGT GCTTGAGCCG ACCTACGGCA TTATCTTGTA TCAGGAACAG
GTCATGCAAA TTGCGCAGGT TCTGTCCGGC TACTCACTGG GTGGTGCGGA CATGTTGCGT
CGTGCCATGG GTAAGAAAAA CCCTGCTGAG ATGGCTAAGC AGCGTTCTGT ATTTGAAGAT
GGTGCGAAAA ATCAGGGTAT TGATGGTGAG CTGGCGATTA AAATCTTTGA CCTGGTTGAG
AAATTTGCAG GTTACGGTTT TAACAAATCT CACTCGGCAG CCTATGCATT AGTCTCCTAT
CAAACGTTGT GGTTAAAAGC CCATTATCCG GCTGAATTTA TGGCTGCAGT AATGACCGCT
GATATGGATA ATACGGACAA AGTGGTCGGC TTGGTCGATG AATGCTGGCG TATGGGGCTG
AAAATTCTGC CCCCTGACAT CAACAGCGGT TTGTACCATT TCCATGTAAA CGATGATGGC
GAAATTGTTT ATGGTATTGG TGCCATTAAA GGTGTAGGTG AGGGGCCGAT AGAAGCCATT
CTGGAGGCGC GTAAAGAGGG GGGCTATTTT AAAGAGTTAT TTGACCTATG CGCCCGTGTC
GATACCAAAA AGCTTAACAA GCGTATTTTA GAAAAACTGA TCATGTCCGG TGCATTTGAC
CGTTTGGGGC CACACCGTGC AGCATTGATG AGTTCTCTCG GGGATGCGCT TAAAGCCGCA
GATCAACATG CTAAAGCCGA AGCAATTGGT CAGGTAGATA TGTTTGGTGT ATTAGCCGAC
GCGCCTGAGC AGGTTGAGCA ATCCTATGCC AATGTGCCGC CATGGCAGGA GCAGGTTGTT
TTAGATGGTG AACGGGAAAC GCTGGGGCTG TATTTAACTG GCCATCCGAT CACTCAGTAC
CTCAAGGAAA TCGAACGCTA TGCCGGTGGG ATGCGTTTGA AGGATATGCA TCCGACGGAT
CGGGGCAAAA TGACCACCGC AGTGGGGTTG GTGATCGCGG CAAGGGTTAT GGTCACAAAA
CGTGGTAATC GCATTGGTAT TTGTACGCTA GATGACCGCT CTGGTCGTCT GGAGGTGATG
TTATTCACCG ATGCATTGGA AAAATATCAG CATTTATTGG AAAAAGACCG TATCCTGATA
GCCACCGGAC AGGTCAGCTT TGATGACTTT AGTGGTGGGC TTAAAATGAC CGCCCGTGAG
TTAATGGACA TCAGTGAAGC TCGTGAAAAA TATGCCCGTG GGCTTGCTAT CTCGCTGACT
GACAGGCAAA TTGATGACCA GCTTTTGAAC CGTCTCCGTC AGTCGTTGGA ACCCCATCGA
GCGGGGACGA TCCCAGTACA TCTTTATTAC CAACGGGAAG ATGCTCGCGC CCGGCTGCGG
TTTGGAGCCA CATGGCGCGT GACGCCCACC GATCGCTTAT TAATCGATTT GCGAACGTTG
GTAGGTAATG AGCAAGTGGA ACTGGAATTT GACTAA
|
|---|
| Protein sequence | MIQSTHFWYL DMAEPRFVHL RVHSDYSMID GLAKIGPLVK RAAALGMPAL AITDFTNLCG
LVKFYGSAHG AGIKPIIGAD FYVQSEILGD ELAHLTVLAR NNEGYQNLTL LISEAYQRGY
GAAGPIIDRD WLIKHKEGLI LLSGGRMGDV GKFLLRGNQV QVDQCLAFYQ EHFPDCYYLE
LIRTGRPDEE NYLHAAVALA TERGLPVVAT NDVRFIDESD FDAHEIRVAI HDGFTLVDPK
RPKNYSPQQF MRDEEQMCEL FADIPEALIN SVEIAKRCNV TIRLGEYFLP QFPTGEMSTE
DFLVEKAKQG LEERLEFLFP DPEVRLQKRP EYDERLDIEL KVINQMGFPG YFLIVMEFIQ
WSKDNGVPVG PGRGSGAGSL VAYALKITDI DPLEFDLLFE RFLNPERVSM PDFDVDFCME
KRDLVIEHVA EMYGRDAVSQ IITFGTMAAK AVIRDVGRVL GHPYGFVDRI SKLIPLDPGM
TLEKAFAAEP QLAEIYEADE EVRALIDMAR KLEGVTRNAG KHAGGVVIAP TKITDFAPLY
CDAEGNNPVT QFDKNDVEYA GLVKFDFLGL RTLTIINWAL EMINVRRAKT GLEPIDIASI
PLEDKKSFDM LQRSETTAVF QLESRGMKDL IKRLKPDCFE DMIALVALFR PGPLQSGMVD
NFIDRKHGRE AISYPDIEWQ HESLKPVLEP TYGIILYQEQ VMQIAQVLSG YSLGGADMLR
RAMGKKNPAE MAKQRSVFED GAKNQGIDGE LAIKIFDLVE KFAGYGFNKS HSAAYALVSY
QTLWLKAHYP AEFMAAVMTA DMDNTDKVVG LVDECWRMGL KILPPDINSG LYHFHVNDDG
EIVYGIGAIK GVGEGPIEAI LEARKEGGYF KELFDLCARV DTKKLNKRIL EKLIMSGAFD
RLGPHRAALM SSLGDALKAA DQHAKAEAIG QVDMFGVLAD APEQVEQSYA NVPPWQEQVV
LDGERETLGL YLTGHPITQY LKEIERYAGG MRLKDMHPTD RGKMTTAVGL VIAARVMVTK
RGNRIGICTL DDRSGRLEVM LFTDALEKYQ HLLEKDRILI ATGQVSFDDF SGGLKMTARE
LMDISEAREK YARGLAISLT DRQIDDQLLN RLRQSLEPHR AGTIPVHLYY QREDARARLR
FGATWRVTPT DRLLIDLRTL VGNEQVELEF D
|
|---|
| |