| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_1073 |
|---|
| Symbol | |
|---|
| ID | 6090257 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | + |
|---|
| Start bp | 1210751 |
|---|
| End bp | 1212106 |
|---|
| Gene Length | 1356 bp |
|---|
| Protein Length | 451 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641596139 |
|---|
| Product | zinc metallopeptidase RseP |
|---|
| Protein accession | YP_001719827 |
|---|
| Protein GI | 170023322 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0750] Predicted membrane-associated Zn-dependent proteases 1 |
|---|
| TIGRFAM ID | [TIGR00054] RIP metalloprotease RseP |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00125076 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGAGCA TACTCTGGAG CCTGGCTGCG TTTATTGTCG CACTGGGGAT CTTAATTACA
GTGCATGAGT TTGGTCACTT TTGGGTGGCA CGGCGCTGTG GTGTCCGTGT AGAGCGTTTT
TCAATTGGTT TTGGTAAAGC GTTATGGCGC CGTACTGATC GTCAGGGAAC CGAGTATGTT
ATCGCCCTTA TCCCACTGGG CGGTTACGTT AAAATGTTAG ATGAGCGTGT AGAGGCTGTT
GCGCCAGAAT TACGCCATCA ATCATTCAAC AATAAAACTG TTTTACAACG TGCGGCAATC
GTCAGCGCGG GTCCTATTGC TAACTTCCTT TTTGCCATCG TCGCTTACTG GCTGGTGTTT
ATCATCGGCG TGCCAAGTGT CCGTCCGGTC ATTGGTGATA TTTCGCCACA ATCTATTGCT
GCGCAAGCCA ATATTTCTTC AGGAATGGAA CTTAAGTCTG TTGATGGCAT CGAAACGCCT
GATTGGGATT CTGTTCGTTT GGCGTTGATC AGCCGAATTG GCGATAAGCA AATGCAAGTG
GGGGTCGCTC CATTTGGTTC CGACAATGTG GTAGAGAAAA CTCTGGATTT ACGCCAGTGG
CAATTTGAAC CCGATAAACA AGATCCAGTT GTAGCACTCG GTATTATCCC ACGTGGTCCG
CAGATTGAAT CTGTCTTGGC TGAAGTTCAG CCAGGGTCAG CGGCACAAAA GGCGGGTTTA
CAAGCAGGGG ATAGGATCGT TAAAGTTAAT GGTCAATTAT TGGATCGTTG GCAGACATTT
GTGTTACAGG TCCGTGATAA TCCCGGCCAG CCGCTGGTAT TAGATATTGA AAGGGAGAGT
ACCCCCTTGT CTTTAACCTT GATACCAGAT ACAAAATCGG TTGGAGAAAA CCGTAGTGAA
GGTTTTGCGG GTGTAGTGCC GAAAGTGATA CCACTTCCGG ATGAATATAA AACAATTCGC
CAATATGGGC CGTTTACGGC AGTCTATCAA GCTGGGGATA AAACCTGGCA GTTGATGCGG
TTGACGGTAA GCATGTTGGG TAAACTGATT ACTGGTGATG TTAAGCTGAA TAACCTAAGT
GGCCCGATAT CTATTGCGCA AGGCGCTGGG CTTTCAGCTG AGTACGGATT GGTGTACTAC
CTGATGTTTT TGGCGCTAAT CAGCGTCAAC TTGGGCATTA TCAATTTGTT CCCATTACCA
GTATTAGATG GTGGACATCT GCTCTTCCTG GCGATAGAAA AGCTGAAGGG TGGGCCGGTT
TCTGAGCGAG TGCAGGACTT CAGTTATCGC ATCGGCTCGA TTTTGCTGGT GCTATTAATG
GGGCTTGCAC TTTTCAATGA TTTCTCCCGT CTTTAA
|
|---|
| Protein sequence | MMSILWSLAA FIVALGILIT VHEFGHFWVA RRCGVRVERF SIGFGKALWR RTDRQGTEYV
IALIPLGGYV KMLDERVEAV APELRHQSFN NKTVLQRAAI VSAGPIANFL FAIVAYWLVF
IIGVPSVRPV IGDISPQSIA AQANISSGME LKSVDGIETP DWDSVRLALI SRIGDKQMQV
GVAPFGSDNV VEKTLDLRQW QFEPDKQDPV VALGIIPRGP QIESVLAEVQ PGSAAQKAGL
QAGDRIVKVN GQLLDRWQTF VLQVRDNPGQ PLVLDIERES TPLSLTLIPD TKSVGENRSE
GFAGVVPKVI PLPDEYKTIR QYGPFTAVYQ AGDKTWQLMR LTVSMLGKLI TGDVKLNNLS
GPISIAQGAG LSAEYGLVYY LMFLALISVN LGIINLFPLP VLDGGHLLFL AIEKLKGGPV
SERVQDFSYR IGSILLVLLM GLALFNDFSR L
|
|---|
| |