| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_1070 |
|---|
| Symbol | |
|---|
| ID | 6091071 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | + |
|---|
| Start bp | 1207686 |
|---|
| End bp | 1208882 |
|---|
| Gene Length | 1197 bp |
|---|
| Protein Length | 398 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641596136 |
|---|
| Product | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|
| Protein accession | YP_001719824 |
|---|
| Protein GI | 170023319 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|
| TIGRFAM ID | [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0235876 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCAAC TGACTATTCT TGGCTCTACT GGCTCCATCG GCAACAGCAC GTTGAGTGTT
GTGCGTGCAA ACCCTGAATT ATTTAAAGTC ACGGCGTTAG TTGCCGGGCG TAATGTCAGG
GAAATGGCGC AGCAATGCCT TGAGTTCTCC CCCCGCTATG CAGCTATGTC TGATGAACAC
TCAGCTAAAT CACTGCGTTT ATTGTTGGCA GAACAGGGTT CAGACACCGA GGTCTATTCC
GGTGAAACGG CTGCCTGCGA ATTGGCAGCT TTAGATGATG TCGATCAAGT GATGGCCGCG
ATTGTTGGCA TTGCTGGTTT ACCCTCAACA TTGGCCGCTA TTCGTGCAGG TAAACAAGTC
TTGCTTGCCA ATAAAGAGTC GCTGATTACC TGCGGTAAAC TCTTTATGGA TGAGGTTAAA
CGCAGCCGTG CTCAATTACT GCCAATTGAT AGCGAGCATA ACGCGATTTT TCAGAGTTTG
CCTGAAAGAA TTCAGCGCCA ATTAGGCTAT TCTTCATTAA ATGAAAATGG CGTTTCACGG
ATTATTTTGA CTGGCTCTGG TGGCCCATTT CGTGAAACTC CACTTTCGCA GTTTTCTGAT
GTCACCCCAG ATCAAGCTTG TGCTCATCCA AATTGGTCTA TGGGGCGGAA AATTTCTGTC
GACTCAGCGA CGATGATGAA TAAAGGCCTG GAGTATATTG AGGCTCGATG GTTATTTAAT
GCCAGCGCAG AACAGATAGA GGTTGTGTTA CATCCGCAGT CTGTTATTCA CTCGATGGTT
CGCTATCATG ACGGAAGTAT CCTGGCACAA ATGGGGACTC CAGACATGCG GACACCGATT
GCACATGCGA TGGCTTACCC AATGCGAGTT AGCTCAGGTG TTGCGCCATT GGATTTTTGC
AAAGTAGGCG CGCTGACCTT TACAACCCCG GATTATCAAC GTTATCCGTG CTTAAAGTTG
GCCATAGACG CCTGTAATGC GGGGCAGGCA GCGACAACAG CGCTGAATGC AGCAAATGAA
ATTTCAGTCA TGGCATTTTT AGATTCAAAA ATTCGTTTCA CTGATATTGA AGTGATTAAC
CGTACTGTTG TTGAAGGTTT ATTATTATCA GAACCTACCA GTGTGGAAGA GGTGTTGGTG
ATTGATCGCA AAGCTCGTGA TGTCGCGGCC CAAGTCATTG CAAAATTAAA TAATTAA
|
|---|
| Protein sequence | MKQLTILGST GSIGNSTLSV VRANPELFKV TALVAGRNVR EMAQQCLEFS PRYAAMSDEH
SAKSLRLLLA EQGSDTEVYS GETAACELAA LDDVDQVMAA IVGIAGLPST LAAIRAGKQV
LLANKESLIT CGKLFMDEVK RSRAQLLPID SEHNAIFQSL PERIQRQLGY SSLNENGVSR
IILTGSGGPF RETPLSQFSD VTPDQACAHP NWSMGRKISV DSATMMNKGL EYIEARWLFN
ASAEQIEVVL HPQSVIHSMV RYHDGSILAQ MGTPDMRTPI AHAMAYPMRV SSGVAPLDFC
KVGALTFTTP DYQRYPCLKL AIDACNAGQA ATTALNAANE ISVMAFLDSK IRFTDIEVIN
RTVVEGLLLS EPTSVEEVLV IDRKARDVAA QVIAKLNN
|
|---|
| |