Gene YPK_0539 details

Gene Information

• Locus tag: YPK_0539
• ID: 6090047
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis YPIII
• Kingdom: Bacteria
• Replicon accession: NC_010465
• Strand: -
• Start bp: 590951
• End bp: 592924
• Gene Length: 1974 bp
• Protein Length: 657 aa
• Translation table: 11
• GC content: 51%
• IMG OID: 641595601
• Product: LppC family lipoprotein
• Protein accession: YP_001719295
• Protein GI: 170022790
• COG category: [R] General function prediction only
• COG ID: [COG3107] Putative lipoprotein

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTTTCCT CAACATTCGT TCGTTCTAAA GCAGGGCTTG TTCCTGTCAT TCTGGCTGCT 
CTTATTTTAG CGGCCTGTAC AGGCGATGCG CCACAAACGC CGCCCCCCGT AAATATACAG 
GACGAAGCAA GCGCTAACTC TGATTATTAT CTGCAACAGT TGCAGCAGAG CAGTGATGAT 
AACAAGGCTG ACTGGCAATT ACTTGCCATT CGTGCCCTAT TACGTGAGGC AAAAGTGCCT 
CAGGCCGCCG AACAACTCAG CACTCTCCCT GCAAACCTGA GCGATACACA GCGCCAGGAA 
CAGCAATTGC TGGCAGCTGA ACTGTTGATC GCGCAGAAAA ATACGCCAGC GGCGGCTGAT 
ATTCTTGCCA AATTAGAGGC AACTCAACTC TCAGCTAACC AAAAAGTACG CTACTATCAG 
GCCCAAATTG CCGCCAATCA GGATAAAGCC ACCCTGCCAT TGATTCGTGC ATTTATCGCT 
CAGGAACCAT TACTGACAGA TAAAGCCCAT CAAGATAATA TTGATGGCAC TTGGCAGTCA 
CTGTCCCAAC TGACACCACA AGAATTAAAT ACCATGGTGA TCAACGCAGA CGAAAATGTG 
CTGCAAGGCT GGCTGGATTT ACTGCGTGTT TATCAAGATA ACAAGCAAGA CCCAGAGCTA 
CTGAAAGCCG GGATTAAAGA CTGGCAAACC CGTTACCCAC AAAACCCGGC AGCGAAAAAT 
CTGCCAACTG CATTAACTCA GATCAGTAAT TTCAGCCAGG CATCCACCGC CAAGATTGCT 
CTGCTGCTGC CATTAAGTGG CCCGGCACAA GTATTCGCCG ATGCCATCCA GCAAGGTTTT 
ACTGCCGCCC AAAATGGCTC AGCGGTAACG GCTTCAGTAC CAGTAACGCC AAATGTGACG 
GAAAGCAGCC CAACGGATAC TGCTGCGGTT GTTTCGGATG ATACCCCGGC CACCCTTCCG 
GCCCCAGTGA CCCCCCCCGT CGTCACCAAC GCCCAAGTGA AAATCTACGA TACCAACACT 
CAACCACTGG CAGCGCTATT GGCTCAAGCC CAGCAAGATG GTGCAACACT GGTCGTTGGC 
CCTCTGCTAA AACCCGAAGT TGAGCAACTC AGTGCCACCC CAAGCACATT GAATATTCTG 
GCGTTGAACC AACCAGAAGC CAGTAATAAC AGCCCAAACA TCTGTTACTT TGCCCTATCG 
CCAGAAGATG AAGCCCGTGA TGCAGCGCAT CACCTGTGGG AACAGCAAAA AAGAATGCCG 
CTGTTGCTGG TGCCTCGTGG TGCCCTTGGT GAACGTATTG CCAAAGCCTT CGCTGACGAG 
TGGCAAAAAC AAGGTGGGCA AACGGTATTA CAACAGAACT TCGGTTCAAC CACTGAGTTG 
AAGCAATCCA TCAACAGTGG TGCCGGTATC CGCCTGACCG GTACCCCCGT TAGCGTTTCT 
AATGTAGCCG CCGCCCCGGC CTCCGTCACT ATTGCGGGCC TGACCATTCC AGCACCGCCA 
ATCGATGCAC CGGTAGTGTC AACGTCTTCG AGCGGTAACA TTGATGCGGT CTATATCATT 
GCGACGCCAT CTGAATTAAC CCTGATTAAG CCAATGATTG ATATGGCAAC CAGTTCACGC 
AGTAAACCTG CGCTGTTTGC CAGTTCACGT AGCTACCAGG CTGGCGCTGG CCCAGATTAC 
CGTCTGGAAA TGGAAGGTAT ACAGTTTAGT GATATTCCGC TGATGGCCGG CTCTAACCCC 
GCTTTGCTGC AACAAGCATC GGCTAAATAC GCTAACGATT ATTCTCTGGT ACGCTTATAC 
GCCATGGGGA TTGATGCCTG GGCATTGGCA AATCATTTTT CTGAAATGCG CCAAATCCCT 
GGCTTCCAAG TCAAAGGGGT CACCGGTGAT TTAACTGCAT CATCAGATTG TGTTATCACC 
CGCAAGCTAC CTTGGTTACA ATATCGCCAG GGAATGGTGG TGCCACTCGC ATAA 

 

Protein sequence

MLSSTFVRSK AGLVPVILAA LILAACTGDA PQTPPPVNIQ DEASANSDYY LQQLQQSSDD 
NKADWQLLAI RALLREAKVP QAAEQLSTLP ANLSDTQRQE QQLLAAELLI AQKNTPAAAD 
ILAKLEATQL SANQKVRYYQ AQIAANQDKA TLPLIRAFIA QEPLLTDKAH QDNIDGTWQS 
LSQLTPQELN TMVINADENV LQGWLDLLRV YQDNKQDPEL LKAGIKDWQT RYPQNPAAKN 
LPTALTQISN FSQASTAKIA LLLPLSGPAQ VFADAIQQGF TAAQNGSAVT ASVPVTPNVT 
ESSPTDTAAV VSDDTPATLP APVTPPVVTN AQVKIYDTNT QPLAALLAQA QQDGATLVVG 
PLLKPEVEQL SATPSTLNIL ALNQPEASNN SPNICYFALS PEDEARDAAH HLWEQQKRMP 
LLLVPRGALG ERIAKAFADE WQKQGGQTVL QQNFGSTTEL KQSINSGAGI RLTGTPVSVS 
NVAAAPASVT IAGLTIPAPP IDAPVVSTSS SGNIDAVYII ATPSELTLIK PMIDMATSSR 
SKPALFASSR SYQAGAGPDY RLEMEGIQFS DIPLMAGSNP ALLQQASAKY ANDYSLVRLY 
AMGIDAWALA NHFSEMRQIP GFQVKGVTGD LTASSDCVIT RKLPWLQYRQ GMVVPLA