| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_2271 |
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| Symbol | |
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| ID | 6120035 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xylella fastidiosa M12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010513 |
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| Strand | - |
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| Start bp | 2411476 |
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| End bp | 2414505 |
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| Gene Length | 3030 bp |
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| Protein Length | 1009 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 641650210 |
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| Product | type I restriction-modification system endonuclease |
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| Protein accession | YP_001776750 |
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| Protein GI | 170731317 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTGAAT ATATCCCGCC CTTTCGTTAT GGACCCATTG TGTGCTCCGA GCAGAGCACC
ATCGTTGCCG AGTTTGTACC CGAGGCCTCG GGTGTGCGTG AGGCGGGATA TCAGTCCGAA
GCGGAGTTGG AAGCAGCTTT CATCAAGCAG TTGCAGGGGC AGGCCTACGA ATATCTGCCG
ATCACCTCGG AGGCCGCGTT GCTGGCCAAT CTTCGGCGCC AGTTGGAAAA GCTCAACAAG
GTCACGCTGT CGGATGCAGA GTGGGAAGGT TTTTTCAGTA CCTGCATCGC GGGTGCACAT
GACGGCATTG TGCAAAAAAC GGCACGCATT CAAGAAGACC ATGTGCAGGT TTTGAAGCGC
GACGATGGCA CCACTAAAAA CATGTGTCTG CTTGACAAGG TCAACATCCA CAACAACACC
TTGCAGGTGA TTAACCAGTA CGCAGTGGAG GGCGCTCGTG CCAATCGCTA TGACGTCACG
GTGTTGGTGA ACGGTTTGCC GATGGTGCAT GTTGAGTTGA AGCGCCGGGG CGTGGACATT
CGCGAGGCTT TCAATCAGAT CAACCGTTAT CAGCGTGATA GCTTCTGGGC GGGTTCGGGG
TTGTTCGATT ATGTGCAGCT TTTTGTCATC AGCAATGGCA CGTTGACCAA GTATTACAGT
AATACGGTGC GTGCCGGGCA TGTGGAGGAG CAATCCAACA AGCGCAGTAA GAGTAAGACT
TCCAACAGTT TCTCTTTTGC CATTTGGTGG GCAGATGCGA AAAATCAGCC GATCACCGAG
TTGACTAGTT TTACCAAAAC GTTTTTCGCC AAGCATTCGC TGCTTAACGT GCTGACCAAA
TACTGCGTGT TTAATGCCAA TCGTAAGTTG TTGGTGATGC GGCCTTATCA GATTGTGGCT
GCCGAGCGCA TTTTGCAACG CATTGTCACC GCCACACATC AGCAGCAGTT GGGTACGGTG
GCGGCAGGTG GCTATATTTG GCACACCACG GGCAGCGGCA AAACGCTGAC TAGTTTCAAG
GTGGCGCAAT TGGCATGCGG TCTGGGCGTG ATCGACAAGG TGTTGTTTGT GGTGGATCGT
AAGGACTTGG ACTACCAGAC GATGCGTGAG TACGAGTCTT TTGAGAAAGG TGCGGCGAAC
TCCAACACGT CCACGGCGGT ATTGCAACGA CAGTTGGAAG ATTCCGACGT CCGCATCATC
ATCACCACCA TTCAGAAGCT TTCTCGCTTT GTCGCCAAGC ACAAGCAGCA CCCTGTGTAT
GGGGCGCATG TGGTGGTGAT TTTTGATGAG TGTCATCGTA GTCAATTCGG CGATATGCAC
ACCAAAATCA CCAGGGAGTT TCAGCGTTAT CACTTGTTTG GTTTCACTGG TACGCCCATT
TTTGCTGAGA ATGCAGGCAG TACACAGAAC CCGATGCGGC GCACGACGCA GCAGACGTTT
GGCGATACTT TGCATACGTA TACGATTGTT GATGCGATCA ATGATAAGAC GGTGTTGCCA
TTTCGCATTG ATTACATCAA TACGATCAAA TCACAGCCGA ATATCAAAGA TAAGAAGGTG
GCAGCTATCG ACACCGAGCG GGCGTTGTTG GCACCAGAGC GGATCAGGCA GATTGTGAGC
TATATCCGGG AGCACTTCGA CCAAAAAACC AAGCGTGCCA GCATCTACCG TCACGAGGGT
AAGCGACTGG CGGGGTTTAA TTCGCTGTTG GCCACTGCTT CCATTGATGC GGCTAAACGT
TATTACGCCG AATTTATGGC GCAGCAAAAG GAGCTGCCCG AGGCACGACG GTTGAAGGTG
GGGTTGATCT ACAGTGTTGC TGCCAATGAG GGGGGAGGTG ATGGGGGGCT GGGTGAGGAG
GAGTTTGAAA CTGAGGGCTT GGATCAAGAT TCGCGGAATT TTCTGGAAGC CGCGATCCAG
GATTACAACA GGTTTTTTGA TCCCAATTCC AGTTTTGATA CGACGGAAGA TAAGTTCCAA
AATTATTACA AGGATGTGTC GAAACAGCTG AAAAACCGTA AGTTGGACAT TCTCATCGTG
GTCAATATGT TCCTGACCGG GTTTGACGCG AGCACGCTCA ACACGCTGTG GGTGGACAAG
CGTCTGAAGG CGCACGGTTT GATACAGGCT TATTCGCGCA CCAATCGCAT TCTCAATTCG
GTTAAGAGCT ACGGCAACAT CGTTTCTTTC CGCAATCTGG AGCAGGAGAC GAATGAGGCG
CTGGCTTTGT TTGGCAACAA GGACGCCAAG GGCATCGTGT TGTTGCGGCC TTACGCTGAG
TATTACAAGG AGTATGAGGA GCGGGTGGGG GAGCTGGTGG CCGCATTTCC GCTGGGGAAG
GCGATCGTCG GGGAGGCGGC ACAAAAGGCA TTTATCACGT TATTCGGTTC GATATTGAGG
CTGAAAAATA TTCTGACTGC TTTTGATGAT TTCGGTGGTC AGGAAATTCT CACGGAGCGG
GAGTTTCAGG ATTATCAGAG TCTGTATTTG AATCTGTATG CGGAATTCCG CAGTGCATCG
GCTGCTGAGA AGGAATCGAT TAATGATGAT GTGGTCTTCG AGATTGAACT CATCAAGCAG
GTGGAAATCA ATGTTGATTT CATTTTGTTG TTGGTCGAGC AGTATGTGAA GAAAAAGGGG
ACGGGGGAGG ATAAGGACAT CCGTGCGACG ATCGAGCGTG CCATTAATTC CAGCCCCAGT
TTGCGTAATA AGAAAGATTT GATTGAGCAG TTTGTCGATT CGGTGAGCAT GAAGGCCAAG
GTGGATGCGC AGTGGCAGGC TTTTGTGGCG GTGAAGCAGA GCCAGGAGTT GGAGGGCATC
ATCGCGGAGG AGAATCTCAA CGCCGAGGCG GCACGTGAGT TCATTGGAAA TGCGTTCCGC
GATGGCAGCA TCCCTGTCAC AGGCACGGCA ATCACCAAAG TCTTGCCGCC GGTATCGCGA
TTTTCCAAGA ACAACGGCCA TGCAGCCAAG AAGCAGGCGG TGCTGGACAA GCTTGCTATC
TTCTTTGAGC GATATTTTGG GCTGGTTTGA
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| Protein sequence | MSEYIPPFRY GPIVCSEQST IVAEFVPEAS GVREAGYQSE AELEAAFIKQ LQGQAYEYLP
ITSEAALLAN LRRQLEKLNK VTLSDAEWEG FFSTCIAGAH DGIVQKTARI QEDHVQVLKR
DDGTTKNMCL LDKVNIHNNT LQVINQYAVE GARANRYDVT VLVNGLPMVH VELKRRGVDI
REAFNQINRY QRDSFWAGSG LFDYVQLFVI SNGTLTKYYS NTVRAGHVEE QSNKRSKSKT
SNSFSFAIWW ADAKNQPITE LTSFTKTFFA KHSLLNVLTK YCVFNANRKL LVMRPYQIVA
AERILQRIVT ATHQQQLGTV AAGGYIWHTT GSGKTLTSFK VAQLACGLGV IDKVLFVVDR
KDLDYQTMRE YESFEKGAAN SNTSTAVLQR QLEDSDVRII ITTIQKLSRF VAKHKQHPVY
GAHVVVIFDE CHRSQFGDMH TKITREFQRY HLFGFTGTPI FAENAGSTQN PMRRTTQQTF
GDTLHTYTIV DAINDKTVLP FRIDYINTIK SQPNIKDKKV AAIDTERALL APERIRQIVS
YIREHFDQKT KRASIYRHEG KRLAGFNSLL ATASIDAAKR YYAEFMAQQK ELPEARRLKV
GLIYSVAANE GGGDGGLGEE EFETEGLDQD SRNFLEAAIQ DYNRFFDPNS SFDTTEDKFQ
NYYKDVSKQL KNRKLDILIV VNMFLTGFDA STLNTLWVDK RLKAHGLIQA YSRTNRILNS
VKSYGNIVSF RNLEQETNEA LALFGNKDAK GIVLLRPYAE YYKEYEERVG ELVAAFPLGK
AIVGEAAQKA FITLFGSILR LKNILTAFDD FGGQEILTER EFQDYQSLYL NLYAEFRSAS
AAEKESINDD VVFEIELIKQ VEINVDFILL LVEQYVKKKG TGEDKDIRAT IERAINSSPS
LRNKKDLIEQ FVDSVSMKAK VDAQWQAFVA VKQSQELEGI IAEENLNAEA AREFIGNAFR
DGSIPVTGTA ITKVLPPVSR FSKNNGHAAK KQAVLDKLAI FFERYFGLV
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