| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_2235 |
|---|
| Symbol | |
|---|
| ID | 6120851 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010513 |
|---|
| Strand | - |
|---|
| Start bp | 2360094 |
|---|
| End bp | 2361995 |
|---|
| Gene Length | 1902 bp |
|---|
| Protein Length | 633 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641650176 |
|---|
| Product | protease IV |
|---|
| Protein accession | YP_001776716 |
|---|
| Protein GI | 170731283 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
|---|
| TIGRFAM ID | [TIGR00705] signal peptide peptidase SppA, 67K type
[TIGR00706] signal peptide peptidase SppA, 36K type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACCAGT CTGTGCCTAG AAATCCCATT GCCCGTTTCT TTATTGGCTT ATGGGGAGCG
ATGAATTTTA CCCGCCACTT AATTCTCAAT TTGGTGTTTT TCGGTTTCTT GTTTTTCTTG
TTATTGATGA TGTTAATTGG AATGACGCAC GGCTTGAAAG GCAAGCAGCT CGACGATCGC
ACGACTCTAT TGATTGCGCC GCAAGGCACA TTGGTGGAAC AGTTCAGTGC CGATCCGGGC
AGTCGTGCAT TAGCCAAAGC GACTGGTGAT AAGAGTGGGC AGGAAGTTCA ACTGCGTGAT
CTGATCCGTG TGATTGAGGC TGCGGCTAAG GATAAGAAGG TTGAACGTGT CCTGCTGGAT
TTGGACAAGT TGCAGCCATC AGGGTATGCC TCATTGCGTG AGGTCGTTGC TGCGTTACAG
AACCTCAAAG ATTCAGGGAA ACAGTTAGTT GCTTTCAGTG AAAGTATGAC TCAGTCGCAG
TATCTGCTTG CCGCACAGGC GGATGAGATT TATTTGGATC CAATGGGCAG TGTTTTGCTT
GAGGGTTTGG CTCACTACCG TCAGTATTTC CGCAAGGGAT TACAAGAAAA ATTGGGTGTG
GATGTTCATC TTTTCCGGGT CGGCGAATAC AAATCCGCGG CTGAGCCTTT TGTTCTTGAT
GCGGCCTCAG CCGATGCCAA GGAGGCCGAT CTGTTCTGGA TGAACGATAT ATGGCAACGC
TATTTGGCCG ATATCGCTAA GGCACGTAAG CTCGATTCGG CGCACCTCAA TACTATAGTC
GAAAGACTGC CGCAGGATAT TGCTGCTAAT CATGGTGATT TGGCCAAGTA TGCATTGGCG
CAGAAACTGG TAGATGGCCT GAAAACTCGC GAGCAAGTGA ACCAGTTAAT GATCCAGCGT
GGTGTTGCAG ATAAAAAGGC CGATGGTGGT TTCCGTAATG TGGACTTCGG TACTTATTTA
AGTTTGCTGG ATGCACAGAG TGTGCCACTA GGCACGTCCT CGCAGATTGC CGTTGTTGTG
GCAGCGGGTG AAATAAAAGG AGGTGATCAG CCAGCCGGTT ATATTGGTGG TGAGTCGACC
AGTATGCTCT TGCGTAAGGC ACGGGATGAA GACGCGGTCA AAGCGGTAGT GCTTCGTGTG
AATTCTCCCG GTGGAGAAGT CTTCGCTTCT GAGCAGATTC GCCGTGAAGT TGTTGCGCTG
AGGAAGGTTG GCAAGCCGGT CGTGGTGTCG ATGGGTGATA TGGCTGCTTC CGGAGGGTAT
TGGATCAGCA TGGATGCTGA TCGCATTTAT GCTGATCCAT CGACGATCAG TGGTTCGATT
GGTATCTTCG GGCTGGTACC CAATATCACT CGTACGCTTG ATAAAGTGGG AGTGCACACG
GATGGCGTGG GTACGACCCG TTTTGCAGGT GCACTTGATA TCACTCGTGC GCTGGATCCG
CAGGTGGGAC AGATATTCCA GAATGTGATC GACAAAGGCT ACGCAGATTT CACAACTAAG
GTTGCGCAGG CGCGTCACCG CTCCGTGAAA GAGATCGACA GTATTGCTCG CGGTCGTGTA
TGGAGCGGCG CGCAGGCGAA AGAACGTGGT TTGGTCGATG AACTCGGGGG AGTGCGCGAG
GCGATTACTG ATGCTGCAAA GCGTGCTAAG CTTGGCGAGG GCCACTACAG TGTGCGTTAT
GTTGATAAGG CAGTCAGCCC ATTTATGCAG TTCATCATCA ACATGATGTC CACCCGGATT
GGGAACTGGG CATTGGGAGA TTCAGGCTTG GCTCGGGTGC TGCTCACCCG TATTTCTCCG
GAAACAGAGG TGCAGTTGCG TTTTGTTGAA GATGCAGTGC GTGAGGCCAA AACTGGCATG
CTTCCAGTCA AACCCTTGGT TTACTGTTTC TGTGGACTTT AG
|
|---|
| Protein sequence | MNQSVPRNPI ARFFIGLWGA MNFTRHLILN LVFFGFLFFL LLMMLIGMTH GLKGKQLDDR
TTLLIAPQGT LVEQFSADPG SRALAKATGD KSGQEVQLRD LIRVIEAAAK DKKVERVLLD
LDKLQPSGYA SLREVVAALQ NLKDSGKQLV AFSESMTQSQ YLLAAQADEI YLDPMGSVLL
EGLAHYRQYF RKGLQEKLGV DVHLFRVGEY KSAAEPFVLD AASADAKEAD LFWMNDIWQR
YLADIAKARK LDSAHLNTIV ERLPQDIAAN HGDLAKYALA QKLVDGLKTR EQVNQLMIQR
GVADKKADGG FRNVDFGTYL SLLDAQSVPL GTSSQIAVVV AAGEIKGGDQ PAGYIGGEST
SMLLRKARDE DAVKAVVLRV NSPGGEVFAS EQIRREVVAL RKVGKPVVVS MGDMAASGGY
WISMDADRIY ADPSTISGSI GIFGLVPNIT RTLDKVGVHT DGVGTTRFAG ALDITRALDP
QVGQIFQNVI DKGYADFTTK VAQARHRSVK EIDSIARGRV WSGAQAKERG LVDELGGVRE
AITDAAKRAK LGEGHYSVRY VDKAVSPFMQ FIINMMSTRI GNWALGDSGL ARVLLTRISP
ETEVQLRFVE DAVREAKTGM LPVKPLVYCF CGL
|
|---|
| |