| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_2188 |
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| Symbol | |
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| ID | 6120159 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xylella fastidiosa M12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010513 |
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| Strand | + |
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| Start bp | 2300702 |
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| End bp | 2302774 |
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| Gene Length | 2073 bp |
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| Protein Length | 690 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641650126 |
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| Product | putative diguanylate phosphodiesterase |
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| Protein accession | YP_001776671 |
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| Protein GI | 170731238 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.975219 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAAA ACAAAGAACG CACGCTACTA CTAATGATCA TTGACGATAA CATTGAGAAT
ACCGAAGCGA TTGTTACTTT GCTGCGAAAT AGCGGCATTG CAGTGCGACC ATCCCGGCCA
AAGCACCTAG AAGACGTGAC AATGATGCTC AGTCACCCAA TTGACCTAGT ACTAGTCGGC
AATTCCTCCC AAATATCACT CAGAGCACTA CATCAACAAA TTTCCACTAG TGGCAAAGAC
GTCCCCCTGA TCCAACTGAC TTGGCAACTC AACGAGAAAG AGTGGATTGC TGCAACCGGT
TTCGGTATCC GCTCAATCGC CTTAGGTCAC CACCCCAAAC ACTTACTGGA AGTGGTAAAC
AACGAAATTG AAGCACTGCA AATACGCCGC AGCCTACGCC GAGTCGAAGC GCAAATACGG
GAGACCGAAC GCCGCTGTAA TGCGCTGATC GCATCGTCAA GAGATCCAAT CGCCTATGTA
CATGAAGGCA TGCACATTCA GGCAAACCAA GCTTACCTGG AAATGTTTGG ATTCGAATCG
TTTGAAGACA TTGAGGGGCT ACCACTGTTA GATTTGATTG CAGCTCCACA CATGGAAGGA
TTCAAGCATC TGCTCAAAAC ACTCTCCAAA GGAAAGAAAC CACCATCGCA ATATAAATTC
GATGCATGTC ACGTAAATGG CAACATATTT CCAGCAACAA TGGAGTTCAC CACCACAACA
TACGAAGGTG AACTCTGCAT CCAAGTAGTA CTCCGTAGCT ACGGAGAATT CGACCAAGAA
TTGACACGTG AAATCGAAAA ACTGCGTCAA CGTGATCCTA TTACCGGGCT GCTAAATCGC
CCAGCCTTCA TCATCGCATT AGAAGATGCT GTAGCACGCG CCGGTATGAA CGGAGATCAA
TTTGGCTTGC TACTAGTTGA ACCTAACCAT TACACAAGAA TCCTACAAGA AATCGGCTTG
GACTCGGCGG ACACACTCAT CACCTCACTC GCAAATTTCT TTTCTGAAAT GATCGATTCA
AAAGTAGCAG TGCGAACCGC GCGTTTCTGC GAGACCAGAT TCGCACTACT GTTAGAGGGC
GATTACACCC ATACCATGAC ACTGGCTGAA CGTATCCGCA TTGACATCGC ACAACATATA
TTCCTGCTTG GAAAACACTC AACCACAGTC ACAGTAAGCA TTGGCGGTGT ACAAATAGGC
GAACGCATCG CCAATTTGTG CCAAGTACTC CATCACGCCG CCGAGTCAGT TCAGATTGCC
ACTCAGCTTG GTGGCAACAC TGCCATAATC TACGATCCAG CGGCAGCGGA TCGCGCAGAG
GAACTGCGAA TCCAGAACTT GCTAAAACAA CTGCAGCAAG CAGTGACAAA CAACGACTTC
ACCATTTATT ACCAACCGAT AATGAGTCTA CAGCAACAAT CCCTAGAGCT ATACCAAATT
TACATAGGCA TGCATGGAGA CGAAGAACTC ATTTCGTCGG TCACACTGCT AGAAATCGCC
AAGAAACGCG AGTTGATCGC ACAAATTGAT CGATGGGTAG TTGCGCGTGC GATCGCACAG
ATCGGTGAAC GCCAGCGGGC CGGCCATACC ACGCATTTAC TGGTACAGAT CGACTCAGCT
TCGTTTACCG ACCCGCAGTT ACTCACCATG CTACGTACAG AATTAGCAGC ACATCATGTT
CGTGGGGAGC AACTGTGGTT ACAAACGCCG GAATCAAAAG TGTTCACCCA TTTATATAAT
GCGCAGCAGT TTCTTAGTGA AATCTCAGTA CAAGGCTGCA AAATGGGGCT AGAACAGTTC
GGTACAGGGC TGGACTCATT CCAGTTATTG ACACATTTCA AGCCAGCATT CCTAAAATTG
GATCGTAACC TAACTCAAGA CATCAACTCC AACCATGACA GTCTAGAAAA GATTCGTGAG
ATAACTTCAC GTGCGCAAGA CAACGGAATT GCAACCTTCG CCGAATTCGT GACCGACTCA
ACGTCGATGA GCGCATTATT CAAGGTAGGC GTGGACTACG TGCAAGGCGA CTTCGTCGCG
CCAATCAGCG CAACAATGAA CAACGAGTTC TAA
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| Protein sequence | MKKNKERTLL LMIIDDNIEN TEAIVTLLRN SGIAVRPSRP KHLEDVTMML SHPIDLVLVG
NSSQISLRAL HQQISTSGKD VPLIQLTWQL NEKEWIAATG FGIRSIALGH HPKHLLEVVN
NEIEALQIRR SLRRVEAQIR ETERRCNALI ASSRDPIAYV HEGMHIQANQ AYLEMFGFES
FEDIEGLPLL DLIAAPHMEG FKHLLKTLSK GKKPPSQYKF DACHVNGNIF PATMEFTTTT
YEGELCIQVV LRSYGEFDQE LTREIEKLRQ RDPITGLLNR PAFIIALEDA VARAGMNGDQ
FGLLLVEPNH YTRILQEIGL DSADTLITSL ANFFSEMIDS KVAVRTARFC ETRFALLLEG
DYTHTMTLAE RIRIDIAQHI FLLGKHSTTV TVSIGGVQIG ERIANLCQVL HHAAESVQIA
TQLGGNTAII YDPAAADRAE ELRIQNLLKQ LQQAVTNNDF TIYYQPIMSL QQQSLELYQI
YIGMHGDEEL ISSVTLLEIA KKRELIAQID RWVVARAIAQ IGERQRAGHT THLLVQIDSA
SFTDPQLLTM LRTELAAHHV RGEQLWLQTP ESKVFTHLYN AQQFLSEISV QGCKMGLEQF
GTGLDSFQLL THFKPAFLKL DRNLTQDINS NHDSLEKIRE ITSRAQDNGI ATFAEFVTDS
TSMSALFKVG VDYVQGDFVA PISATMNNEF
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