| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_1814 |
|---|
| Symbol | |
|---|
| ID | 6121533 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010513 |
|---|
| Strand | - |
|---|
| Start bp | 1881544 |
|---|
| End bp | 1885272 |
|---|
| Gene Length | 3729 bp |
|---|
| Protein Length | 1242 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641649781 |
|---|
| Product | exodeoxyribonuclease V beta chain |
|---|
| Protein accession | YP_001776333 |
|---|
| Protein GI | 170730900 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
|---|
| TIGRFAM ID | [TIGR00609] exodeoxyribonuclease V, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACACCC CCCATGACCC CTATCTGACC TTGCCCCTCC ACGGCGTGCG TCTGATTGAA
GCCTCCGCGG GCACTGGTAA AACCTTCACC ATGGCCACCC TCGTCACCCG ACTTGTGGTC
GAACGAGGCT GGCGCATCGG CCACATTCTT GCAGTGACCT TCACCGAGGC CGCGACCCAA
GAACTACGCA CCCGGATCCG CGAGCGCCTA ATACTCGCCG CCCGTCTCGT CCCGCAGGCT
GCTGAACTGC CGGTGCCCCT TCCCTCAGCA CAACCACAGA TGTCGCATCC AACACCCCAT
CCCCAGGATG CACCTCGCAT CACTCCTGGA GTGACCAACT CCGCCTCCCC TGAACCCCCA
GATGTTGTGT TGACCCTACA GATCCTGCGT ACCCACCTTG CCGCTACGGA TGAGACCCCA
CACGCCCTGC ACTCCCGTCT ACAACAGGCC GCCGATGAAA TCGACCTCGC GGCGATTTTC
ACCATTCATG GCTTCTGCAC ACGCGTACTG CGCGAACATG CCTTGCATAC CGGACAAAGC
TTCATTCCGC CTACCTTACT GGCCAGTGAC CGCGATTTAC TACACGAACT GGCCGCCGAC
ATATGGCGTC AAGAAATTGC TGATCCCGAG GCCATCCAAG ACCTCATCCA CCTCTGGCCC
GCAGGCGCAC CGATGCTGGC TCAGGACCTG ACAGACCTGC TCTACCAACC GCACTTATCT
CCCGCGCCAT CGCTGGCAGC ACCAGTGGTG CTGCCTGATG CTGCCCTTGC CGTCGCTGAG
ACCACATTGC GCCACCTCTG GCAGACCGAG GGCGCGGCAC TGCGCAGCGC ACTGCACACC
GCCTTAGAAG AGGGCGTCCT CAACAAGAAA AGCTACAAAG CCGATGCACT GAACGATCTC
TGGGATTGGA TGGAACGCTG GAGCCTCGCA CCCAACGCCT ATCCAGAGCC ACACCCCAAA
CTGCAAACAT TGACCGTTGC GGCCTTGCAA GCCGGCACCA ATAAACAGGG TGCCGGACGC
AGCCCAAACT CCCCCGTGAG CGAAGCCGTA CAGCATTACC TGGACGCACT GACGAGCATC
GAAACAGCAC GCGCCCAGCA TCGCTTACGT CGCCTGCATC GCTTGCGTGC CGCAGCCCGC
CTCCGCCTCA CCGCACTCAA ACGCCAGCGT CGCGTACAGA CCTACGATGA TTTGATTCAA
CGTGTCGCCC AGGCACTGGA TGGGCCGCAT CGCCTCGCCC TAGTGCGGTC CCTGCGCCAA
CAGTACCGCA TGGCCCTCGT CGATGAATTC CAAGATACCG ACGTGGCCCA ATGGCGCATC
TTTCATCACG TCTTTGGTGA TACCGAGCAC GCACACACCG CCGACCTCAC ACCCGCATTG
TTTTTGATTG GCGACCCCAA ACAGGCCATC TATGGCTTTC GTGGTGGCGA CGTACACACC
TACCTGGCCG CCGCCGCCCG TGCCGAACGC GCGCCCCCGC TGGAGCGTAA CTTCCGCTCC
CGTCCCCTAT TACTGCGTGC CATTGAAGCA CTGTATACCC AAGCCGGCGA TGCAGCCTTC
CTCACCCCAG GCATTGCCTT CCACCCCGTA CAGCCAGGCA CCCACTGCCG CGATACAGAC
CTCAGCAACG CCGGAGTTCC CGCACCCGCG TTACAAGTGT GGCAAGCCCC ACCGCCATTG
GACAGCACCG CCAAGGGCAA ACCCAAACCC TGGAATGCCG ATGCCGCGCG CGCCCTGTGC
ACCGATGCCT GCGTCCATGC CATTCACCAA TGGCTTGCCG ACGCACAGAC CGGGCGCGCC
CTGCTGGATG GCCGCCCCGT GGGTGCCGGC GACATCGCCG TATTGGTGCG CAGCCACCGT
GAAGCCACAT TGATGCAGCA GGCCCTAGCG CGTGCGGGCA TTCCTGCCGT TGCTGCTGGC
AAACGCAGCC TATTGACCAC CGACGAAGCC AATGAAGCCC TGGCACTATT GCTGGCACTG
CTTCACAGCG CTGACGAAGG CCGTTTGCGT ACCGCACTGT CCACCGTCCT CGTGGGCCTT
ACCGCAGAGA CAATCGCCAC ATTTGACCAT GACAGCGTTG CCTCCCGTCA CTGGCAGCGC
CAGGCGTTGC ACTGGCGCGA ACGCTTACAC AGTGGCGGCC CCTTGGGGTT ACTGACCGAC
CTATGCGCGC TACATGCCGC ACGCTTGCTC AGCCTCTTCG ACGGTGAGCG CCGTTTGAGC
AACTACCTAC AACTGGGGGA ACTACTCCAG CAAGTCCACC TGCGCGCCCT GGGCTTACAT
GGCTTGGTTG ATTGGTTGGC ACGGCGGATT GCTGAAGCCA AGAACGATGA CGAAACACAG
CTATTGCGTT TGGAATCAGA TGCGCGCCGC GTGCAGATAG TCACCCTGCA TAAAAGCAAA
GGCCTGGAAT ACCCACTGGT ATTCCTGCCT TACGTTGCGA TTGGCCGTTC CCATGCCGGC
CCAGGCCGTT ATTGCGTCGT ACACGATGCG CAGCAAGGGC GCTGCCTGCA TTGGTGCCTT
GATAAACAAG CACCAGAGTG GCAACGCGCT GAAACAGCGT GGAAACAGGA GCAGCGCGCT
GAAGAAGCAC GCCTACTCTA CGTTGGCCTG ACCCGTGCCA AACATGCACT GTGGATCGCT
ACCGGCACCT TCTATCAGAC GGAACACACC CCCTTATGGC CACTGCTGGG TGATCCCCAG
GCAGTGCCGG CGCAGCCGGG CATCGTCTTT GACACAGCTG TACCACCGGC AATTTTGCCC
CGTTTGACCC CAGAACAGCC GCACAGCGTC CCCCCCGCAC GGACCGCACA GCGTGCCCTG
CTTTCGGATT GGTGGGTGTA CAGCTTTACC CAATTGGCGC ATGCCAAAGC GGAGCCTGCT
CCTGATGGGG GTCGCCGTAT TGCCGAGCCA CTCACCGGAG GGCAGGACGA ACCAGCCTGG
CCACAGGATG CCATCCAACA GCCCCTACCT GGGAGCGAAG TGCCCGCCGC CCCCCGTTTT
ACCGGCATCC GTTTTGGTGT GGCACTGCAT GAAGTGTTCG AGCGTACCGA CTTCCTAGCC
TGGAGCACTT GGCGTGCCAA TGTCCCTGTG CCTGCGACGG AACGTGGCGT GTTGCTTCAA
GCCCTGCGTA GCAGCGGCTA CGTGGCTGAA GACGTGGAGG CCGGTGTCGC CTTGCTAACC
CCATTGGTGG GCCATACCTT GACCAGTGTC CTTCCCGAGG GCGTGCGTTT GTGCGATGTG
CCGACAACCG AGCGGCGACC GGAGATTGAA TTCCAATTTG TCATCCAGGC CACGGCGGTG
GATGCCTTGC TTGCTTTGCT CCATGACCAC GGCTTGCTAC AGCAGCGTCA GAGCTTCGGC
ATGCGGCGTC GCTTGGAAGG ACTGATGACC GGCATGATCG ACCTCATTTA TCGCCACGCC
GGACGGTGGT ACGTCCTGGA TTACAAAAGC AATCGCCTGC CGGATTACAC GCCAGCGCAT
CTTTCTGTGG CGATGACTGA CAGTGAATAT GACCTGCAGG CGCTGATCTA CACCGTGGCC
CTGCATCGCT GGTTGCGTTT CCGTTTGCGT GATGCGTACG ACTACGCACG TGATATGGGA
GGCATCCGTT ACCTGTTCTG CCGCGGTATG GACGCGACGC GTCCCGATGC AGCAGGCGTG
TATACGCAAT CCTTTGCTCC TGCCTTGATT GAGGCAGTCG ATGCGATGTT CAGTGGAGCC
TGCCCATGA
|
|---|
| Protein sequence | MNTPHDPYLT LPLHGVRLIE ASAGTGKTFT MATLVTRLVV ERGWRIGHIL AVTFTEAATQ
ELRTRIRERL ILAARLVPQA AELPVPLPSA QPQMSHPTPH PQDAPRITPG VTNSASPEPP
DVVLTLQILR THLAATDETP HALHSRLQQA ADEIDLAAIF TIHGFCTRVL REHALHTGQS
FIPPTLLASD RDLLHELAAD IWRQEIADPE AIQDLIHLWP AGAPMLAQDL TDLLYQPHLS
PAPSLAAPVV LPDAALAVAE TTLRHLWQTE GAALRSALHT ALEEGVLNKK SYKADALNDL
WDWMERWSLA PNAYPEPHPK LQTLTVAALQ AGTNKQGAGR SPNSPVSEAV QHYLDALTSI
ETARAQHRLR RLHRLRAAAR LRLTALKRQR RVQTYDDLIQ RVAQALDGPH RLALVRSLRQ
QYRMALVDEF QDTDVAQWRI FHHVFGDTEH AHTADLTPAL FLIGDPKQAI YGFRGGDVHT
YLAAAARAER APPLERNFRS RPLLLRAIEA LYTQAGDAAF LTPGIAFHPV QPGTHCRDTD
LSNAGVPAPA LQVWQAPPPL DSTAKGKPKP WNADAARALC TDACVHAIHQ WLADAQTGRA
LLDGRPVGAG DIAVLVRSHR EATLMQQALA RAGIPAVAAG KRSLLTTDEA NEALALLLAL
LHSADEGRLR TALSTVLVGL TAETIATFDH DSVASRHWQR QALHWRERLH SGGPLGLLTD
LCALHAARLL SLFDGERRLS NYLQLGELLQ QVHLRALGLH GLVDWLARRI AEAKNDDETQ
LLRLESDARR VQIVTLHKSK GLEYPLVFLP YVAIGRSHAG PGRYCVVHDA QQGRCLHWCL
DKQAPEWQRA ETAWKQEQRA EEARLLYVGL TRAKHALWIA TGTFYQTEHT PLWPLLGDPQ
AVPAQPGIVF DTAVPPAILP RLTPEQPHSV PPARTAQRAL LSDWWVYSFT QLAHAKAEPA
PDGGRRIAEP LTGGQDEPAW PQDAIQQPLP GSEVPAAPRF TGIRFGVALH EVFERTDFLA
WSTWRANVPV PATERGVLLQ ALRSSGYVAE DVEAGVALLT PLVGHTLTSV LPEGVRLCDV
PTTERRPEIE FQFVIQATAV DALLALLHDH GLLQQRQSFG MRRRLEGLMT GMIDLIYRHA
GRWYVLDYKS NRLPDYTPAH LSVAMTDSEY DLQALIYTVA LHRWLRFRLR DAYDYARDMG
GIRYLFCRGM DATRPDAAGV YTQSFAPALI EAVDAMFSGA CP
|
|---|
| |