| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_1527 |
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| Symbol | rumA |
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| ID | 6119968 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xylella fastidiosa M12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010513 |
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| Strand | - |
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| Start bp | 1590758 |
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| End bp | 1592089 |
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| Gene Length | 1332 bp |
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| Protein Length | 443 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 641649515 |
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| Product | 23S rRNA 5-methyluridine methyltransferase |
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| Protein accession | YP_001776071 |
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| Protein GI | 170730638 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.334033 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCTCGCC AAAATCGTTT CGACCGTACG TCATTTCAAA CGCAGATTAT CGATCTCAGT
CATGATGGGC GTGGGGTTGC ACGACCTCAT GGCGAGGGAG GTAAGGTGAC TTTCGTCACT
GGTGCGCTTC CAGGTGAGGT GGTGATTGTT GAGCCAGTTG CGCGTAATCG TCATTTTGAT
GAGGCACGTG TCGTTGAGGT GTTGCAGGCA TCGCCGCAAC GGGTGATACC GCGTTGCTCG
CATTTTGGTG TCTGTTCTGG TTGTGTATTG CAGCATTTGG CTGAAGATGC GCAGGTTGTG
TCGAAGCAAC GGGTGTTGTT GGAAAGTTTG GAACGTATTG GTCGTGTCAG TCCGGAGCGT
GTGTTGTCGG CGTTGGCCGC GGAGAGCTGG GGGTATCGGC GTAAGGGTCG TTTTTCTGTA
CGTTGGGTGG AGAAAAAGGG GAGGACGCTG GTTGGTTTCC GGGAGCGTGA TCCGCGTTTT
GTTGCCGATG TGTCGGTCTG TCATACAGTG GTTCCGCATG TCGGTGAAAA AATTGCGCTT
TTGGCAACGT TGCTTGACAG TTTGGACGGT AGGCGTGACG TACCGCAGAT TGAGTTTATT
GCCGGTGATG CTGTTGTGGC GTTAACGGTG CGTCATTTGC AGCCGCTGAG TGAGGCGGAT
CGTTTGGCGC TGATTGAGTT TGGCAAGGAG CATGGTATTG CAATTTTTTT GCAGTCGGGT
GGGGTGGAGA GTGTGCGTTT GTTGTGGCCT GATGAGGTGT TGTTGGCATT TCGGTTAAAG
CCTTGGGATG TGGAGTTTGT GTTCCGTCCG CTGGATTTCA TTCAGATCAA TGGGGGGCTG
AATGAGAAGA TGATTGCGCA TGCTTTGGAT CTGCTCGGTG CTGGATTTGG GGAGCGTGTG
CTCGATCTGT TTTGTGGTTT GGGTAACTTC ACGTTGCCGT TGGCGCGTAC TGTGGGTGAG
GTGGTTGGAG TGGAGGGTGA TATTGGGCTG GTGGAGCGGG CCAGGGAGAA TGCACGGCGT
AATGGTTTGG GTAATGCTGA ATTTTTTGTT GCTGATTTGA CCCGTGATCA ACGCGATGCG
CCGTGGATGC GTCAGGGCTT TGATAAGTTG CTGTTGGATC CGCCGCGTTC CGGAGCGATT
GAGGTACTCA AGCAGTTGCC GTTAAAGATG TTCGAACGCA TCGTTTATGT CAGTTGTCAT
CCTGGATCTC TGGCGCGTGA TGCTGATTTC CTTGTCAATG AACAGGGCTT TGTGTTGCGT
GCGGTTGGGG CGATGGACAT GTTTCCGCAT ACTGCCCACG TGGAGAGTAT TGCTGTATTT
GATCGTTGCT GA
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| Protein sequence | MARQNRFDRT SFQTQIIDLS HDGRGVARPH GEGGKVTFVT GALPGEVVIV EPVARNRHFD
EARVVEVLQA SPQRVIPRCS HFGVCSGCVL QHLAEDAQVV SKQRVLLESL ERIGRVSPER
VLSALAAESW GYRRKGRFSV RWVEKKGRTL VGFRERDPRF VADVSVCHTV VPHVGEKIAL
LATLLDSLDG RRDVPQIEFI AGDAVVALTV RHLQPLSEAD RLALIEFGKE HGIAIFLQSG
GVESVRLLWP DEVLLAFRLK PWDVEFVFRP LDFIQINGGL NEKMIAHALD LLGAGFGERV
LDLFCGLGNF TLPLARTVGE VVGVEGDIGL VERARENARR NGLGNAEFFV ADLTRDQRDA
PWMRQGFDKL LLDPPRSGAI EVLKQLPLKM FERIVYVSCH PGSLARDADF LVNEQGFVLR
AVGAMDMFPH TAHVESIAVF DRC
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