| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_0718 |
|---|
| Symbol | psd |
|---|
| ID | 6120480 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010513 |
|---|
| Strand | - |
|---|
| Start bp | 770916 |
|---|
| End bp | 771797 |
|---|
| Gene Length | 882 bp |
|---|
| Protein Length | 293 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 641648778 |
|---|
| Product | phosphatidylserine decarboxylase |
|---|
| Protein accession | YP_001775343 |
|---|
| Protein GI | 170729910 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0688] Phosphatidylserine decarboxylase |
|---|
| TIGRFAM ID | [TIGR00163] phosphatidylserine decarboxylase precursor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAATTTCG TCACCACCCT GACCTATCTT CTGCCACATC GCATGCTGTC CTCGCTGGCA
CGCCACATCG CCTATTGCCA GCATCCACTG ATCAAACAGT GGTTGATCGA CACAGTCATC
GCAAAATTCG ATGTCAACCT GAGCGAAGCG GCGGAGCCGG ATGCCCATGC CTACCCAAGC
TTTAATGCCT TTTTCACCCG ATCACTTAAA GCCGGCATAC GCCTCCCTGA TCCGAATCCG
GACACATTGC TCATGCCAGC CGACGGACGC ATCAGTCAAC TCGGGCCAAT CCGCGAAGGG
CGCATCTTTC AAGCCAAGGG CCAGTCCTTC ACTGCAACCG AGTTATTGGG CGATACCGCT
GCTGCTTCTG CCTTCACCAA CGGGCTGTTT GCCACTGTCT ACCTATCGCC ACGTGACTAC
CACCGCGTGC ATATGCCTTG TACGGGTCAG CTGCTCAAAA CAGTGCATGT ACCAGGCCGC
TTATTCAGCG TCGGCCCAGA TGCAGTACGC CAAATTCCAC GACTGTTCGC ACGTAACGAA
CGACTGGTAT GTCATTTTGA CACTGCATTC GGGCCGATGG TCTTAGTGAT GGTCGGAGCG
CTGCTTGTCT CTGGTGTGGA AACGGTTTGG GGTGGTGTGG AAATCCCCGC TTATGGCGAT
CGCATCACAC ACAAGGACTA CCAAGGACGC AATATCGCCA TAGAGCGCTT CGCAGAAATG
GCACGCTTCA ACTATGGTTC AACAGTCATC GTGCTATTGC CACCAAATGT CTTCACCCTC
GCCCCTCACC TCACAGCAGA AAGCCCGGTC ACACTCGGTC AAGCACTAGC ACACCGTCTT
TCTTTGAATC ACTCAACGCA GGCACCTACA CAAGAAAAAT AA
|
|---|
| Protein sequence | MNFVTTLTYL LPHRMLSSLA RHIAYCQHPL IKQWLIDTVI AKFDVNLSEA AEPDAHAYPS
FNAFFTRSLK AGIRLPDPNP DTLLMPADGR ISQLGPIREG RIFQAKGQSF TATELLGDTA
AASAFTNGLF ATVYLSPRDY HRVHMPCTGQ LLKTVHVPGR LFSVGPDAVR QIPRLFARNE
RLVCHFDTAF GPMVLVMVGA LLVSGVETVW GGVEIPAYGD RITHKDYQGR NIAIERFAEM
ARFNYGSTVI VLLPPNVFTL APHLTAESPV TLGQALAHRL SLNHSTQAPT QEK
|
|---|
| |