| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | XfasM23_1084 |
|---|
| Symbol | |
|---|
| ID | 6203871 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M23 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010577 |
|---|
| Strand | + |
|---|
| Start bp | 1227588 |
|---|
| End bp | 1228637 |
|---|
| Gene Length | 1050 bp |
|---|
| Protein Length | 349 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 641702608 |
|---|
| Product | signal transduction histidine kinase, nitrogen specific, NtrB |
|---|
| Protein accession | YP_001829786 |
|---|
| Protein GI | 182681626 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3852] Signal transduction histidine kinase, nitrogen specific |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.00314585 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGGTTC CACCACCATC ATTAGAAAAT TTATGTACCC CAGTAGCATG GGGGGATGCT
GAAGGACGTA TCCAAGGTGT TAATGCAGCT TTCGCATATT GGCTTGGAGT CAGTGAAAAA
CGTCTACAAC AGCAAACTCT GGAAGCACTT GAGCATCAGG GAAATGCCCT GTCAAGCTTC
CTGAACAATG ATGAACACAA TGTACTGCAT TTGCATCGTT TTGCACTCGG GATACCCGGT
GGGACGCCGT CTTTCGCTGA GGGTTGGTTA ACTAGGTTGG AAGCAGGCGC TTGGTTACTC
GAAGCGCATC CAATCAAAGA GTGTTCCGCA TTGGACACGC TTCAAGCATT ACCTAATGCG
CTTAGCGCTG CGTTCAAAGG GCTTGCGCAT GAGTTGCGCA ATCCGCTCTC TGGCCTCAAA
GGTGCTGCAC AACTGTTAGC ACGCCGTGTC AAACACCGCG ACCAGGAGGA ATGCGATTTG
GTTGAACTGA TTGGTGCCGA GATCGAACGG CTGAACACCC TGTTGGAGCG CCTATTGTTT
TCGGCACCGG CGCGTCCGCA TGCGCAGATT AATATTCATA CTGTGCTTGA GCGCGTCCTG
CCTTTAGCTG AAACTGAAGC CGGTTGCTCA GTGATCCTAC AGCGCGACTA TGACCTCGGT
ATTCCGAACA TCCTTGGAGA TGCTGATAGG TTGACCCAGG CAGTATGGAA CTTAGTACGC
AATGCGATCC AAGCCGGTGC CAACCGTATC ATCCTGCGTA CTCGCGTTGA TCATGGGCAG
CGCATCCGTG ATCGTATCAA CGTGATATCG CTACGTTTGG AGGTCATTGA TGATGGCGAT
GGTGTTCCCG AAGCATTGGC CGAACACGTA TTTCTACCAT TGGTCAGCAG TCGTGCAGAG
GGGAGCGGTC TTGGCTTGCC CCTGGCTCAG CAGGTCGCGC ACGAGCATCA TGGAATGCTG
ACTTTCCGCT CACAGCCAGG ACAGACCATA TTTATCCTGT CGCTACCTCA AATGATGATC
GAGTCTGACA AGGATCTGCA CTATGGTTGA
|
|---|
| Protein sequence | MPVPPPSLEN LCTPVAWGDA EGRIQGVNAA FAYWLGVSEK RLQQQTLEAL EHQGNALSSF
LNNDEHNVLH LHRFALGIPG GTPSFAEGWL TRLEAGAWLL EAHPIKECSA LDTLQALPNA
LSAAFKGLAH ELRNPLSGLK GAAQLLARRV KHRDQEECDL VELIGAEIER LNTLLERLLF
SAPARPHAQI NIHTVLERVL PLAETEAGCS VILQRDYDLG IPNILGDADR LTQAVWNLVR
NAIQAGANRI ILRTRVDHGQ RIRDRINVIS LRLEVIDDGD GVPEALAEHV FLPLVSSRAE
GSGLGLPLAQ QVAHEHHGML TFRSQPGQTI FILSLPQMMI ESDKDLHYG
|
|---|
| |