| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | XfasM23_1078 |
|---|
| Symbol | |
|---|
| ID | 6203841 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M23 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010577 |
|---|
| Strand | + |
|---|
| Start bp | 1222322 |
|---|
| End bp | 1223974 |
|---|
| Gene Length | 1653 bp |
|---|
| Protein Length | 550 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 641702602 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001829780 |
|---|
| Protein GI | 182681620 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG5377] Phage-related protein, predicted endonuclease |
|---|
| TIGRFAM ID | [TIGR03033] putative phage-type endonuclease |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000000782333 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACATCA TTGAACTGAC CCAAGGCACC CCGCAATGGC ACACCCACCG CGCCAAGTAT
CTCAATGCCA GCGACGCACC GGCCATGATG GGATGCAGCC CCTATAAAAG CCGTGCCGAA
CTGATACGGG AACGCGCCAC GGGGATCACC CCTGACTATG ACCAAGCCAC GTTACAACGT
TTTGCTGAGG GGCATCGCGT TGAAGAACTG GCACGCCCCT TGGCAGAACG CATCATCGGT
GATGACCTGT ATCCCTGTGT TGGTGTCGAT GACATGTATT CGGCCAGCTT CGACGGCTTG
ACCTTGCTGG AAGACACCGT CTGGGAACAC AAGCAACTCA ATGACACGAT TCGCGCCGCC
ATGACAGACG GCAGCACCGG CCAAGACCTG CCATTACATT ATCAAATACA GATGGAACAC
CAGAGCATGG TGTCCGGTGC CCAACGTGTC CTGTTCATGG CCTCGGCCTG GAACGGTGAA
CAGCTCATAG AAGAACGTCA TTGCTGGTAC ACCCCCAACC CCGAATTACG TACCCGCATC
ATCAACGGAT GGCAACAACT GCAAGCGGAC ATTGCCGCCT ACCAGCCTGA GCCACCACCA
CCGCCTGCGG CCTTGGGGCG TTCACCAGAG CAACTACCGG CATTGCATAT TGCAGTCACA
GGAACAGTGA CCACCTCCAA CCTGCCGCAC TTCAAAGCCT GCGCACTAGC CGTATTGCAC
AACATCAACC GTGACCTGCG CACCGATGAG GATTTTGCCA ACGCAGAACA AACCGTGAAA
TGGTGCAAAG GCGTCGAGAC GCGCCTAGAC GCCACCAAAC AACAGGTATT AGGACAAACC
GCCGACATCG ATGCCGTCTT CCGCACCCTG GACGAAATCG CCGAAGAAAC CCGCCGCGTC
CGTCTTGAGT TGGATCGCTT GGTGAAAACC GAGAAAGATC ACCGCCGTAC TGAGATTGTC
CACACCGGCC TGAAGACCCT GCGTGACTAC TACGCCAGCC TCAACGCGAG GTTAGAGGAG
TATGCCCTAC CGATTCCGGC TGATTTGCCT GCAAAGATCG GTGACACCAT CAAAGGCAAG
AAGTCGATGA TCAGCATGCA GGAGGCTGTG AGCGCCGCCG TGGCTCACGA GAAGATCAAC
ATCACTGCCC ACGTGGAACG GGTGCGCGCC AATATCACCG TGATGGAAGC ATGTGAGGCG
GCTTACCGCT CCCTGTTTCC AGACAGGGTG AGTCTATGCA TCAGCAAAAC ACCCGATGAC
CTGCGCAATC TGATCCTTGC CCGCATTGCC GATCATCAGC AGCAGGAACA GGCACGCATC
CAAGCCCAAC GCGAGCGCCA GAACACCGCA GCAGCGGTGC CCGTCCACGT GCCGCCATCA
CCACATCCCT CCTCGGAATT GAGTTCAACC ACCAGCAGCG CCACTGCCGC ACCCGCATCC
AGCGGTGACC TCATCAGACT GCGCCAGATC AATGAGTGGA TTGCCCCGCT AGCGATCAAT
TCCGATGGAT TAGCGTCACT GGGGTTTGTT CCCGTCAGTA CCGAATACGA CGTCAAGTGG
TACGCCGCTG CTGAATTTCC TGTGATCTGT CATGCCTTGA AACAGGTGTT GTCCGACGCT
TCATCCCGCA CCGCCATCAA GCAGGCCGCG TGA
|
|---|
| Protein sequence | MNIIELTQGT PQWHTHRAKY LNASDAPAMM GCSPYKSRAE LIRERATGIT PDYDQATLQR
FAEGHRVEEL ARPLAERIIG DDLYPCVGVD DMYSASFDGL TLLEDTVWEH KQLNDTIRAA
MTDGSTGQDL PLHYQIQMEH QSMVSGAQRV LFMASAWNGE QLIEERHCWY TPNPELRTRI
INGWQQLQAD IAAYQPEPPP PPAALGRSPE QLPALHIAVT GTVTTSNLPH FKACALAVLH
NINRDLRTDE DFANAEQTVK WCKGVETRLD ATKQQVLGQT ADIDAVFRTL DEIAEETRRV
RLELDRLVKT EKDHRRTEIV HTGLKTLRDY YASLNARLEE YALPIPADLP AKIGDTIKGK
KSMISMQEAV SAAVAHEKIN ITAHVERVRA NITVMEACEA AYRSLFPDRV SLCISKTPDD
LRNLILARIA DHQQQEQARI QAQRERQNTA AAVPVHVPPS PHPSSELSST TSSATAAPAS
SGDLIRLRQI NEWIAPLAIN SDGLASLGFV PVSTEYDVKW YAAAEFPVIC HALKQVLSDA
SSRTAIKQAA
|
|---|
| |