| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xcel_0879 |
|---|
| Symbol | |
|---|
| ID | 8648389 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylanimonas cellulosilytica DSM 15894 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013530 |
|---|
| Strand | - |
|---|
| Start bp | 943440 |
|---|
| End bp | 945182 |
|---|
| Gene Length | 1743 bp |
|---|
| Protein Length | 580 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | |
|---|
| Product | VanW family protein |
|---|
| Protein accession | YP_003325469 |
|---|
| Protein GI | 269955680 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCACG ACAGCCCCAC CGAGCAAGCC CGGCGCACAC GTCGCCTGTG GTGGACCGCC
GCCGGCGTCG CCACGCTCGC CGCCGCCTAC GGCGCCGCCC AGTGGTCCCT CGCCGACCAG
GTGCCCACCG GCGCCACCGT CGCCGGCATC GACGTCGGCG GACTGCGGCA CGATGACGCC
GTCGCAGCGC TCGACGACGC CGCGGCCCTG CTGGCCGACC AGCCCGTACC GGTGACCGCC
GGGACCGCAG AGACCACCGT GCTGCCCACC GACGCCGGCC TGGCCCTCGA CGCCGCAGCC
ACCATCGAGC CGCTGACCCG GTTCACGCTG CACCCGGCAC GACTGTGGAC CCACCTGCGC
GGCGCCGCCG AGATCGAGCC CGCCGTGACC ATCGACCGCG ACCTGCTCGA CGCCGCCGCG
TCCCGCCTGT CCACCGAGCT CGTGCGCGAA CCCGTCGACG GCGCCGTGGT GTTCGCCGAC
GGCGAGCCGG TGGTCACCCC CGCCGAACCC GGCACCCAGG TGGACCCCGA CGCCGTCGGA
CAGGTCCTGG CGACCGGCTG GCTCGCCCAG GACCACCCGC TGGAGCTCCC GCACGAGCCC
GTCGAGCCCG CCATCACGCA GGAGCTCACC GACGCCGCCT ACGCCGCCGC CCGCCAGATC
GTCGCCTCCC CCGTCGTCGT CGACGCCGCC GGGCAGCACG CCGAGCTGCC GGCGTCGGCG
CTCGCGGACG CGACCGCGTT CGAGGTGGTC GACGGCGCGC TCGTCCCGAC GTTCGACGGC
GACGCCCTGC TCGCCGCCGT CGTCGAGCGG ACGCAGAACC TGCTCGACGC CCCCGTGAAC
GCCCGCTTCC AGGTCACCGG CGGGCGCCCG CAGGTGACCG GCGGCACCCC CGGCACCACC
ATCGACCCCG CCGCGCTGGT CGAGGCGGTC CAGGCGGCGG CCCTCGGCGA GGACCGCACC
GCCGTCGTCG ACGTCGTGCA GCAGGACCCG GAGGTGACCG CGGAGTCGCT CGAGGCGCTC
GGCGTGAACG AGGTCGTCGC CCGGTTCTCC ACGAGCCTGA CCGCCAACCG GGTGCGCACC
GACAACATCC GCCTCGGCTC CGAGCGGATC ACCGGGACGC TCATCCGCCC GGGCGAGACG
TTCTCGCTGC TGGAGGCGCT CGGCCCGATC ACCACCGCGA ACGGGTTCGG CAACGCCCCC
GTGATCGTGG GCGGGCAGTT CGTGCCCGGC GTCGGCGGCG GCCTGTCACA GCTCGCCACC
AACGTGTTCA ACGCCGGCTT CTTCGCCGGG TTCGAGATCG TCGAGCACCG GCCGCACTCC
GTGTGGATCC CGCGCTACCC CGCCGGGCGC GAGGCGACGA TCTTCACCGG GTCCATCGAC
CTGCGCTTCC GCAACAACAC CCCGTACGGC GCGGTGCTGC ACGCGTTCGT GGCCGACGGG
CAGCTCACCG TGCAGGTGTG GAGCACGGAG CACTTCCGCG TCGAGACCAC CCAGAGCGAG
CGCCGCAACG TCGTGCCCGC CGTGACGAAC CACTCGACCG CGGCCGGCTG CACGCCGCGC
GCCGCGGGCT CCGACGGGTT CACCATCACC AACACCCGGC GCGTGTACCG CGGCAGCACG
CTGGTCATCG ACGAGGCCCA CACCTGGACC TACCGCGCCG ACCACGGCAC CTCCTGCGGC
CCGGCGGAGC CGCCGCCCGC CCCGGAGGCG GACGCCGCGC CCGAGGACTC CGCCCCCGAG
TAG
|
|---|
| Protein sequence | MSHDSPTEQA RRTRRLWWTA AGVATLAAAY GAAQWSLADQ VPTGATVAGI DVGGLRHDDA
VAALDDAAAL LADQPVPVTA GTAETTVLPT DAGLALDAAA TIEPLTRFTL HPARLWTHLR
GAAEIEPAVT IDRDLLDAAA SRLSTELVRE PVDGAVVFAD GEPVVTPAEP GTQVDPDAVG
QVLATGWLAQ DHPLELPHEP VEPAITQELT DAAYAAARQI VASPVVVDAA GQHAELPASA
LADATAFEVV DGALVPTFDG DALLAAVVER TQNLLDAPVN ARFQVTGGRP QVTGGTPGTT
IDPAALVEAV QAAALGEDRT AVVDVVQQDP EVTAESLEAL GVNEVVARFS TSLTANRVRT
DNIRLGSERI TGTLIRPGET FSLLEALGPI TTANGFGNAP VIVGGQFVPG VGGGLSQLAT
NVFNAGFFAG FEIVEHRPHS VWIPRYPAGR EATIFTGSID LRFRNNTPYG AVLHAFVADG
QLTVQVWSTE HFRVETTQSE RRNVVPAVTN HSTAAGCTPR AAGSDGFTIT NTRRVYRGST
LVIDEAHTWT YRADHGTSCG PAEPPPAPEA DAAPEDSAPE
|
|---|
| |