| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xaut_3997 |
|---|
| Symbol | |
|---|
| ID | 5421242 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthobacter autotrophicus Py2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009720 |
|---|
| Strand | - |
|---|
| Start bp | 4425146 |
|---|
| End bp | 4427584 |
|---|
| Gene Length | 2439 bp |
|---|
| Protein Length | 812 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640883252 |
|---|
| Product | conjugal transfer ATPase TrbE |
|---|
| Protein accession | YP_001418877 |
|---|
| Protein GI | 154247919 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
|---|
| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.678924 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGAACC TCGCGGAATA CCGGCGTCAC GCCAGCCGGC TCGCCGACTA CCTGCCCTGG
GCGGCACTGG TCGGCTCTGG CGTCGTCCTC AACAAGGATG GCAGCGTCCA GCGGACGGCA
CGCTTCCGTG GGCCGGACCT TGATTCCGCG GTGCCGGCCG AACTGGTGGC GGCGGCGGGT
CGCCTCAACA GCGCCTTTCG CCGCCTCGGC TCCGGCTGGG CACTCTTTGT GGAGGCCCAG
CGACACCCGG CGGGTGCCTA TCCGGCGAGT GTCTTTCCCG ATCCCGCCTC CGCGCTGGTC
GAAGCCGAGC GCAAGGCCGA CTTCGCGGAA GCCGGCAGCC ATTTCGAATC CAGCTATTTC
CTCACCTTCA CCTGGCTGCC GCCGGCGGAG GACGCTGCAC GGGCGGAGAG CTGGCTCTAT
GAAGGCCGCG CGCGTGGTGG CGTCGATCCC TATGAGGCGC TCGGCGCCTT CGTCGACCGC
ACGGACCGAG TCCTGCGGCT CGTCGAGGCC TTCATGCCCG AGTGCCGCTG GCTCGACGAT
GCCGAGACCC TCACATATCT GCACGGTTGC GTCTCGACCA AGCGCCAGCG GGTCCGCGTT
CCCGAGACGC CCATGTATCT CGACGCCCTG CTGGCAGACC AGCCGCTCAC CGGCGGGCTC
GAGCCGATGC TGGGGTCCGA GCATCTACGC GTCCTCACCA TCGTCGGCTT CCCGACGGCG
ACGACGCCGG GGATCCTCGA CGACCTCAAC CGGCTCGCCT TTCCCTATCG CTGGTCCACC
CGCGCCATTC TCCTCGACAA AACCGACGCC ACCCGGCTCC TCACCAGGAT CCGCCGGCAG
TGGTTCGCCA AGCGCAAGTC CATCGCCGCC ATCCTGAAGG AGGTGATGAC CAACGAGGCC
TCGGTACTGG TGGATTCAGA TGCCGCCAAC AAGGCGGTGG ATGCCGACCT CGCTTTGCAG
GAGCTCGGCG CCGACCATGC CGGCATCGCC TATCTTACCG CGACGGTGAC CGTCTGGGAC
GCCGATCCCC GCATCGCTGA CGAGAAGCTC CGGCTGGTGG AGAAGGCAAT CCAGGGCCGG
GACTTCACGG CCATGGTCGA GACGATCAAT GCCGTGGATG CCTGGCTCGG CAGCTTGCCG
GGGCACGTCT ACGCCAATGT CCGCCAACCG CCCATTTCCA CCCTCAACCT CGCCCATATG
ATCCCGCTGT CGGCGGTGTG GGCGGGCGAG GCACAGGACG CGCATTTCGG CGGGCCGCCG
TTGTTCTACG GCAAGACCGA GGGGGCGACC CCGTTCCGTT TTTCCCTCCA CGTTGGCGAT
GTGGGCCACA CCCTCGTGAT CGGGCCGACG GGCGCCGGCA AGTCGGTGCT GCTGGCGCTG
ATGGCATTGC AGTTCCGGCG CTACGCTGGA TCCCAGGTGT TCGCTTTCGA CTTCGGCGGC
AGCATCCGGG CGGCCGCCCT CGCCATGGGC GGCGACTGGC ACGACCTCGG CGGGAGCCTG
TCCGATGGGA GCGAGGACAG CGTCGCGCTC CAGCCTCTTT CCCGTGTGGA TGATCTCGCC
GAACGCTCAT GGGCCGCCGA CTGGATCACG GCGATCCTCT CCCGCGAGGG CGTTTCCATC
GCCCCGGAGG TGAAGGAGCA CATCTGGTCG ACCCTCACCT CCCTTGCCTC CGCTCCCGTC
GAGGAACGGA CCCTCACCGG CCTCGCCGTC CTGCTCCAGT CCAACGATCT CAAACAGGCG
CTACGCCCCT ATTGTATCGG TGGCGCCCAT GGCCGGCTGC TCGATGCCGA GGCGGAGCAC
CTGGGGCAGG CCTTCGTCCA GGCCTTCGAG ACCGAAGGGC TGATCGGCAC CACCGCGGCA
CCGGCCGTGC TGTCCTATCT GTTCCACCGC ATCGAGGACC GGCTCAACGG GTCTCCGACC
CTCATCATCA TCGATGAGGG ATGGCTCGCC CTTGATGACC AGGGCTTTGC CGGCCAGCTC
CGCGAGTGGC TTAAGACGCT GCGGAAGAAG AACGCCAGCG TCGTCTTCGC CACGCAGTCC
CTCTCCGACA TCGACGGCTC GGCCATCGCC CCGGCCATCA TCGAGAGCTG CCAGACGCGG
CTGCTGCTCC CCAACGAGCG GGCCGTCGAG CCCCAGATCA CCGCCATCTA CCGGCGCTTC
GGCCTCAACG ACCGGCAGAT CGAGATCCTC GCACGGGCCA CCCCGAAGCG GGACTATTAC
TGCCAGTCCC GACGCGGCAG CCGCCTGTTC GAGCTCGGGC TGTCGCAGGT GGCGCTCGCC
TTGTGCGCCG CCGGGTCCAA GACCGATCAG GCTGCGCTCT CGCTGATCCT CGCCGAGCAT
GGGCGCGATG GTTTCCTCGC CGCCTGGCTA CGGCATCGGG GCCTCGGCTG GGCCGCCGAC
CTCATCCCCA CCCTCGACCT TCTGGAGACA CGCTCATGA
|
|---|
| Protein sequence | MMNLAEYRRH ASRLADYLPW AALVGSGVVL NKDGSVQRTA RFRGPDLDSA VPAELVAAAG
RLNSAFRRLG SGWALFVEAQ RHPAGAYPAS VFPDPASALV EAERKADFAE AGSHFESSYF
LTFTWLPPAE DAARAESWLY EGRARGGVDP YEALGAFVDR TDRVLRLVEA FMPECRWLDD
AETLTYLHGC VSTKRQRVRV PETPMYLDAL LADQPLTGGL EPMLGSEHLR VLTIVGFPTA
TTPGILDDLN RLAFPYRWST RAILLDKTDA TRLLTRIRRQ WFAKRKSIAA ILKEVMTNEA
SVLVDSDAAN KAVDADLALQ ELGADHAGIA YLTATVTVWD ADPRIADEKL RLVEKAIQGR
DFTAMVETIN AVDAWLGSLP GHVYANVRQP PISTLNLAHM IPLSAVWAGE AQDAHFGGPP
LFYGKTEGAT PFRFSLHVGD VGHTLVIGPT GAGKSVLLAL MALQFRRYAG SQVFAFDFGG
SIRAAALAMG GDWHDLGGSL SDGSEDSVAL QPLSRVDDLA ERSWAADWIT AILSREGVSI
APEVKEHIWS TLTSLASAPV EERTLTGLAV LLQSNDLKQA LRPYCIGGAH GRLLDAEAEH
LGQAFVQAFE TEGLIGTTAA PAVLSYLFHR IEDRLNGSPT LIIIDEGWLA LDDQGFAGQL
REWLKTLRKK NASVVFATQS LSDIDGSAIA PAIIESCQTR LLLPNERAVE PQITAIYRRF
GLNDRQIEIL ARATPKRDYY CQSRRGSRLF ELGLSQVALA LCAAGSKTDQ AALSLILAEH
GRDGFLAAWL RHRGLGWAAD LIPTLDLLET RS
|
|---|
| |