| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xaut_3854 |
|---|
| Symbol | |
|---|
| ID | 5420806 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthobacter autotrophicus Py2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009720 |
|---|
| Strand | + |
|---|
| Start bp | 4272492 |
|---|
| End bp | 4273163 |
|---|
| Gene Length | 672 bp |
|---|
| Protein Length | 223 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 640883110 |
|---|
| Product | heme exporter protein CcmB |
|---|
| Protein accession | YP_001418735 |
|---|
| Protein GI | 154247777 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG2386] ABC-type transport system involved in cytochrome c biogenesis, permease component |
|---|
| TIGRFAM ID | [TIGR01190] heme exporter protein CcmB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.174193 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGGCCG CCTTTTTCGC CATCGTGCGG CGCGACCTCG CCTTGTCCCT CGGCTCCGGC
GGCGGGGCGG GGCTGGGGGT GGTGTTCTTC CTCAGCGTGG TCACGGTGGT GCCGTTCGCG
GTGGGGCCGG ATCTGGTGCT GCTGGCGCGC ATCGGCCCGG CCATCCTGTG GATCGGCGCC
TTGCTCGCGA GCCTCATCGG CCTGGAGCGC CTGTTCGCGT CCGATGCGGA GGACGGCTCG
CTGGATGCGC TCACCCTGTC CGCCCTGCCG CTGGAACTGG CGGCGGCGGC CAAGGGCCTG
GCTCACTGGC TCGCCACCGG CCTGCCGCTG GTGCTCGCCG CCCCGGTGCT GGCGCTGATG
CTGAATCTGG AGCCCGCCGC CATCGGCGCG GTGGTGCTGA CCCTGCTGGT GGGAACCCCC
GCGGTCACCT TCCTCGGGCT CATCGGCGCG GCCTTTGCCG GCGCGTTCCG GCGCGGCGGG
CTGCTGATCG CGGTGCTGGT GATTCCCCTC GCCATTCCGG TGCTGATCTT CGCCGTATCG
GCGACGCAGG CGGCGGTGGT GGGGCCGGTG CCGTTCGGCA CGCCGTTCCG CGTGCTGCTG
GGGCTCACCC TGTTCGCGCT GGTGCTGGGG CCGGTGGCGG CCGCCGCCGC GCTCAGGGCG
GCGCGATCCT GA
|
|---|
| Protein sequence | MMAAFFAIVR RDLALSLGSG GGAGLGVVFF LSVVTVVPFA VGPDLVLLAR IGPAILWIGA
LLASLIGLER LFASDAEDGS LDALTLSALP LELAAAAKGL AHWLATGLPL VLAAPVLALM
LNLEPAAIGA VVLTLLVGTP AVTFLGLIGA AFAGAFRRGG LLIAVLVIPL AIPVLIFAVS
ATQAAVVGPV PFGTPFRVLL GLTLFALVLG PVAAAAALRA ARS
|
|---|
| |