| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xaut_2106 |
|---|
| Symbol | |
|---|
| ID | 5422089 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthobacter autotrophicus Py2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009720 |
|---|
| Strand | - |
|---|
| Start bp | 2364533 |
|---|
| End bp | 2366836 |
|---|
| Gene Length | 2304 bp |
|---|
| Protein Length | 767 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640881358 |
|---|
| Product | general secretion pathway protein D |
|---|
| Protein accession | YP_001417007 |
|---|
| Protein GI | 154246049 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1450] Type II secretory pathway, component PulD |
|---|
| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.832393 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGAAGTGC GGAAAGATCG GCCAAACCGG TTCGGCTCCC GACCGGGCAC CCTGCTGTTG
ACGTGCGCGA TCCTCATCGC CACGGCGCTG GCCGCGTGTT CTCTGGTGCC CGACGACGTC
AAGCCGCCGA GCGTGATGGA CCAGGTCCGC GCCATCGACC TGCTGCCGCG CGACACCAAG
CCGGTGCCCG GCCCGCAGGA CATTCCCGAC GACCGCAAGG CCATCGAATA TTTCGGCTCA
AGCACCGCGG CAGCGGTCTC CGACCGTTCC GAGGTGGGCG TGGCCGGACG GGGCGGCGTG
AGCGGCGGCG CGGACGGCTA TGACCTCAAC TTCGACAACA CGCCGGTGAC CAGCGTCGCC
AAGGTGGTGC TGGGCGACAT CCTCGGCGTG GGCTACGTCA TCGACCCGCG GGTGCAGGGC
ACGGTGACCC TCGCCTCGGC GCGGCCGGTG CCGAAGACCG AGCTGCTGTA CGTGCTCGAA
GCCGCGCTGA AGACCAACAA CGTGGCCATG GTGCGCGAAG GGGCCGGCTA TCGCCTCGTG
CCCCTCACCG AGGCGGCGGG CGGCGGCAAT GCGGATGTGG GCACCTCGCG GCCGGAGCCG
GGCTACGGCA TCTCCGTGGT ACCGCTGCGC TATGTCTCCG CCGAGGCGCT GATGCCGCTG
CTGGACAGCT TCGCCACCAG GGCCGGCGCG GTGCGCGCCG ATCCCGGACG CAATCTGCTC
ATCGTCCAGG GCACCGGGTC CGAGCGGCAA TCGGCCATCA ACACCGTGCT CTCCTTCGAC
GCCGACTGGA TGCGCGGCCA GTCGGTGGGG GTCTATCCGG TCCGCAACAG CGCGCCCGAG
CCGCTGATCT CCGAGCTGGA GAGCATCATG GACGCGGGCG ACAGCGGGCT GAGCCACAAG
ATGGTGAAGT TCCAGGCCAT CAACCGCCTC AACGCCATCA TGGTGGTGGC CAAGAAACCG
GAGCTGCTGC AGACCGCCGG AACCTGGATC GGCCGCCTCG ACCGTTCCGA CACCACGGTG
GGCGTGCGCG TCTATCGCCT GCGCTACGGC GACGCCAAGC AGATGGCAAA GGTGCTCAAC
GAGCTGTTCG TCGGCGGATC GTCCAGTGGC CTCGACCAGG CGGCCAGCCA GATCGCGCCC
GGCTCCGGCG CCTCGGTCTC GTCCGGCGGC GGTTCGGACG GAAATGGTTC CGGATCGGGC
CTCACGGTGC AGCAGCGGCT CGGCCAGTCC CCGCCCAAGC AGGACACGGG CGGCACGGGG
GGCAAGACCA TCGCCGTCGA CAGCGAGGGC GCGCCCGTCG GCGGCTCCGG CGGCGGCGCG
GGAGGGGGCG GCGCGCTGCT GTCCGGCATC CGCATCACCG CCGACGCCAT CAACAACTCG
CTGCTGATCT TCGCCAGCCA GGAGAATTAC CGCATCATCG AGCGCACCCT GATGCAGCTC
GACCAGCCGC AATTGCAGGT GGCCATCGAG GCCACCGTGG CCGAGGTGAC GCTGAACGAC
ACCCTGGCCT ACGGCGTCCA GTTCTATCTC ACCAGCAAGG ACCTCGGCCT CGGCCGCAAC
AACGGCTCGG TGCTGAACAC CCTGTCCAGC GACATCACCG ACCAGGCCAT CAACCGCGTG
CTGCCCGGCT TCAACCTGCT GGTGGGCCGC GAGAACCAGC CCCGCGCCAT CCTCGACGCC
CTGCATACGG TGACCGACGT GAAGGTGCTG TCCAACCCGT CCGTGGTGGT GGTGGACAAC
CAGAAGGCGA CGCTGCAGGT GGGCGACGAG GTCCCGGTCT CCACCGGCAG CGCCACGGTG
CTCTCGTCCT CCAACACGGT GGTCAACACC ATCGAGTACA AGAACACCGG CATCATCCTC
CACGTGGTGC CGCGGGTGAA CGTGAACGGG CAGGTGCGGC TCGAGATCGA GCAGGAGATC
AGCAACGTCA CCCAGTCCGA TCCCACCACC AGCGGCACCA GCAGCAATTC CACCGGGCTC
ACGCCCACCG TGTCCCAGCG CAAGGTGAAG AGCGTCATCG CCGTGGCGAG CGGGCAGACC
GTACTGCTCG CCGGTCTCAT CAGCGAGCGC CACAACGGCG TGCGGCAGGG CGTGCCGATC
CTCGACCAGA TCCCCGGCGT CGGCGACGCC TTCGCCCACA CCAACGGCAC GGTGAAGCGC
ACCGAGCTGA TCATCTTCAT CCGGCCCCAG ATCATCCGCG ACAATGTGGA TGCCCATACG
GTGGCTGAAG AGCTGCGCGC CAAGCTGCGC GGCACCGTCA CCACCCTGCC AGGCGGCCCG
CAGGCGCCGC TCGGCGCACG GTGA
|
|---|
| Protein sequence | MEVRKDRPNR FGSRPGTLLL TCAILIATAL AACSLVPDDV KPPSVMDQVR AIDLLPRDTK
PVPGPQDIPD DRKAIEYFGS STAAAVSDRS EVGVAGRGGV SGGADGYDLN FDNTPVTSVA
KVVLGDILGV GYVIDPRVQG TVTLASARPV PKTELLYVLE AALKTNNVAM VREGAGYRLV
PLTEAAGGGN ADVGTSRPEP GYGISVVPLR YVSAEALMPL LDSFATRAGA VRADPGRNLL
IVQGTGSERQ SAINTVLSFD ADWMRGQSVG VYPVRNSAPE PLISELESIM DAGDSGLSHK
MVKFQAINRL NAIMVVAKKP ELLQTAGTWI GRLDRSDTTV GVRVYRLRYG DAKQMAKVLN
ELFVGGSSSG LDQAASQIAP GSGASVSSGG GSDGNGSGSG LTVQQRLGQS PPKQDTGGTG
GKTIAVDSEG APVGGSGGGA GGGGALLSGI RITADAINNS LLIFASQENY RIIERTLMQL
DQPQLQVAIE ATVAEVTLND TLAYGVQFYL TSKDLGLGRN NGSVLNTLSS DITDQAINRV
LPGFNLLVGR ENQPRAILDA LHTVTDVKVL SNPSVVVVDN QKATLQVGDE VPVSTGSATV
LSSSNTVVNT IEYKNTGIIL HVVPRVNVNG QVRLEIEQEI SNVTQSDPTT SGTSSNSTGL
TPTVSQRKVK SVIAVASGQT VLLAGLISER HNGVRQGVPI LDQIPGVGDA FAHTNGTVKR
TELIIFIRPQ IIRDNVDAHT VAEELRAKLR GTVTTLPGGP QAPLGAR
|
|---|
| |