| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Veis_3710 |
|---|
| Symbol | |
|---|
| ID | 4693081 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Verminephrobacter eiseniae EF01-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008786 |
|---|
| Strand | - |
|---|
| Start bp | 4103355 |
|---|
| End bp | 4105826 |
|---|
| Gene Length | 2472 bp |
|---|
| Protein Length | 823 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639851465 |
|---|
| Product | Type IV secretory pathway VirB4 components-like protein |
|---|
| Protein accession | YP_998443 |
|---|
| Protein GI | 121610636 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
|---|
| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.693344 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTTGC GCGCCCGCTC GCCCGAAGGC TGCACCGAAT CCCTGGCCCA GTTTCTGCCG
TGGCTGGTGC ATGTGACGCC GGATCTCGTG CTGTGCAAGG ACGGCTCGCT GCTCGCGGCG
TTCGAGTACA CGGGCGTGGA CATCGATGAG GACAATCCGC TCGTCATCGA CAGCGCCGTG
CTGCAATTGC AAAAGGCGCT GCAGGCGCTC GATGAGCGGT TCTACATCTG GTGGGTGATC
GACAAGCGCA AGAAGCTGGC CCCGGATCAG TGGGAATCGG ACGCGCATGA CGGCCTGCAC
GCGGCGATGG CGGCCCGGCG CAAGCTCCAG TACGACAGCG GCCGGGTCTT CACGATCGAC
TTTCGGGCGT TCATCTCTTA CACCGGCGAG ACTGGCGTGT ATGCCTTCAT GGACCAGGTT
CGCCGCAGGA TGACAGAGCA AGGGCAGTCG CTGCCTGCGG CGCTGCTGTC GGGGCTCGAT
CCGGCGCGCA ATTTCAGGAA CGCCGTGCTG CATGACGCCC GGCAGCTCGA TGAGAACATC
CGGCAAGCCG AGGGCGGCAT CCGTCAATTC ATCGCGGCCA ACAGCGTCGT CTCCTTGCGC
CGCATGGGCG GCTGGAAGTT GGACAACTGC CTGGTGCGGA TGGCGAACCT CAGCCACCGG
GCCGAGCCGG ATCACCAAGT GCTGCCCCAC TCGATGCTCG ACGCAGCGGC GGCGCTGTCG
GATGTGAAAT TCGGCCGGGA GGTGTTGATC AGCTATGGGC CCGATCGCCA TGTCTTCGGT
GTTGCCTTGA CCCTGAAGGA TTACCCGGCG TCTGCGGCCA CCTTGCTGGG CATCCTGGGC
CTGCACATGG AGTTGCGCCT CGTGCATGTG ATCAAGTGCA TGAGTGCGGC CACGGCGCGG
GCCACGCTCG ATGAGGTCAC GCGCTACTAC CGCATGACCC AGAGCACGCT GCTGCAGCGG
GTGGGCGCAT ACCTGAACGG AGCGCAGCCC GAAGTCGATC CGGGCAAGGC CGATCTGTAT
GCGCAATGCC TGCAAGCGAT GCGCCGGCAA CTGGCAGAAA ACCTGGGCTT CGTGCACCAC
TCGATGACGC TCATCGTGCT CGATGAGAGC GCCCGGGCGG CCGAGCAGCG TGCCGATGAG
GCGCTGCGCT CGCTGAGCAA GATCCCCTTG ATTCGCGAGC GTGTGGGCCT GAAAGCGTCC
TACCTGTCCA TGCTGCCGGG GCAGTGGGCC ACCAACCGGC GGCTGATGCT CGCGAACGCC
GAGCTGGTGG CCCAGGCGGC GCCGCTCGTG ACCGCCGAGG CTGGCTCGAA CTACTGCCAG
CATCTGTCCA GCCAGGTCTA TGGCAAGCAT GTTCCGCCGC TGGCGACGTT CCAGTCGATG
CTGGGCACGC AGGTGCATTT CGATCCGTTC GTCGGGCAGG TCGGACACAC CCTGCTGGTC
ATGCCCACGG GCGGCGGCAA GACGACGTTC GTCAACTACT GCCTGTCCCA GTTCACGCGC
TACGAGCGCG GCCAGGTCAT CATCTTCGAC CGCGATCGCT CATGCCGGAT CATCACCGGG
CTTGCCGGTG GCACGCACAT GGACATGCGA TCCAACGGCA TGCGGCTCAA TCCCCTGTCG
AACCTGCGCC ATGGCGACCT GGGCAAGGTG CAGGCGCGCG AGTTCCTGTT GCGCCGCATT
GCCGAGGCCG GTGATGGCGT GCTCGCCGAG GATCGCCAGG AGCTGTACCG CGTGCTGGAC
AACGTCGCGC AATCCTCGCA GGAGCTGCGC CTGTCCACGG TGTGGACGCT GCTGCCCCGC
AAGCTGCAGG TGCTGCTGTC CGAGTGGGTC GAGGGCGGGC CTTTCGGGTA CTTCGATTCG
GTGCAAGACG ATTTCGAGGT TGCGGATTGG ACCTGCATCG AGATGCGCGG CATCATGTCC
GTGGAGCGGC TCGCGCGCGC CTTCCTCGAC CATGCCCTGA CGGTCATCGA GCGGCAACTG
ACCGGGCGCC CGACGCTGAT CTACCTGGAG GAGGCTTCCT TTGTGCTGAA CGACGGCGCG
TTCCTCGACG CCATCGACGG CTGGCTCAAG ACATTCCGCA AACTCAACGC GATGGTGTGG
CTCACGGTGC AGTCGCCGCA AGCGGTATCG GGCATCGAAA GCGAGAAGAT CCGGGCCACC
CTGGCCGACA ACGTGCCGAA CCTGATCCTG GGCTACAACC CGCGCCTGGA AAACCACCGC
CCGTTGTATC GAAGCATGTT CGGCATGACG CACGAACAGG TGTCCCTGAT CGGCGAGCTG
ACCCCCAAGC GCGATTACCT GCGGATTTTC AGCGGCAATT GCCAGACGCT GCGCACGGAT
TTCGATGACT ATACATTGGC CCACCTGCGC TCGGAGCCGG CCTATCAGGA TCTGTTCGAC
CAGGCCAAGG CCAGCGGCAG GCAAGACTGG CGCGGGTGGT ACATCGGACA GGCTCTGCGG
AGAAAGCAAT GA
|
|---|
| Protein sequence | MALRARSPEG CTESLAQFLP WLVHVTPDLV LCKDGSLLAA FEYTGVDIDE DNPLVIDSAV
LQLQKALQAL DERFYIWWVI DKRKKLAPDQ WESDAHDGLH AAMAARRKLQ YDSGRVFTID
FRAFISYTGE TGVYAFMDQV RRRMTEQGQS LPAALLSGLD PARNFRNAVL HDARQLDENI
RQAEGGIRQF IAANSVVSLR RMGGWKLDNC LVRMANLSHR AEPDHQVLPH SMLDAAAALS
DVKFGREVLI SYGPDRHVFG VALTLKDYPA SAATLLGILG LHMELRLVHV IKCMSAATAR
ATLDEVTRYY RMTQSTLLQR VGAYLNGAQP EVDPGKADLY AQCLQAMRRQ LAENLGFVHH
SMTLIVLDES ARAAEQRADE ALRSLSKIPL IRERVGLKAS YLSMLPGQWA TNRRLMLANA
ELVAQAAPLV TAEAGSNYCQ HLSSQVYGKH VPPLATFQSM LGTQVHFDPF VGQVGHTLLV
MPTGGGKTTF VNYCLSQFTR YERGQVIIFD RDRSCRIITG LAGGTHMDMR SNGMRLNPLS
NLRHGDLGKV QAREFLLRRI AEAGDGVLAE DRQELYRVLD NVAQSSQELR LSTVWTLLPR
KLQVLLSEWV EGGPFGYFDS VQDDFEVADW TCIEMRGIMS VERLARAFLD HALTVIERQL
TGRPTLIYLE EASFVLNDGA FLDAIDGWLK TFRKLNAMVW LTVQSPQAVS GIESEKIRAT
LADNVPNLIL GYNPRLENHR PLYRSMFGMT HEQVSLIGEL TPKRDYLRIF SGNCQTLRTD
FDDYTLAHLR SEPAYQDLFD QAKASGRQDW RGWYIGQALR RKQ
|
|---|
| |