| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6369 |
|---|
| Symbol | |
|---|
| ID | 7975691 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | + |
|---|
| Start bp | 1117555 |
|---|
| End bp | 1118256 |
|---|
| Gene Length | 702 bp |
|---|
| Protein Length | 233 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644796936 |
|---|
| Product | polar amino acid ABC transporter, inner membrane subunit |
|---|
| Protein accession | YP_002948195 |
|---|
| Protein GI | 239821010 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.232186 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGACT TCGACCTGCT CGCGATCCTG CTGAAGCCGG AGTTCGGCGC GATGCTCTGG
CACGGCCTGC AGGAAACGCT GAAGATCGCG GCCGGCTCCT GGCTGCTGGC CATGGCCATG
GCGGTCGTGC TGCTGGTCGT GCGCCTCACG CCGAACCGGC TGGCCGAACG TGTGGTGGCG
GGCTACGTCT CCTACCACCG CAACGTGCCC ACGCTGGTGC AGCTCATGCT CTGGTATTTC
GGCATCTTCA GCCTGCTGCC CGATGCGCTG CAGGGCTGGC TGTCGGTGCA CAACGCCGAG
ACCATTCTTT CGATCGTCGC GCTCGGGCTC TGCCAGGCCG CCTACTTCAG CGAGGACATG
CGCTCGGGCC TTCGCTCCAT CCCGCCCGGC CAGGCCGAGG CCGCGCGCGC GCTCGGCCAT
GGCTACATCG GTTCGATGCG CCACGTGATG CTGCCGCAGG CCATCCGCAA CGCGGTGCCG
GCACTGGTGA ACCACAGCGT GTCGCTGTTC AAGAACAGCA GCCTGGCCAT GGCCATCGGC
GTGGCCGAGT TGACCCATGC GGTGAAGGAG ATCGAGAGCC AGAGCTTCCG CACCTTCGAG
GCCTACAGCA TGGCGACCGT GCTGTACCTC GTGTGCTCGC TGCTCATCAT GGCGCTGGGC
GGCTGGCTGT CGCGGCGCTA CCGCATCGCC CAAGCGAGGT AA
|
|---|
| Protein sequence | MKDFDLLAIL LKPEFGAMLW HGLQETLKIA AGSWLLAMAM AVVLLVVRLT PNRLAERVVA
GYVSYHRNVP TLVQLMLWYF GIFSLLPDAL QGWLSVHNAE TILSIVALGL CQAAYFSEDM
RSGLRSIPPG QAEAARALGH GYIGSMRHVM LPQAIRNAVP ALVNHSVSLF KNSSLAMAIG
VAELTHAVKE IESQSFRTFE AYSMATVLYL VCSLLIMALG GWLSRRYRIA QAR
|
|---|
| |