Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_6263 |
Symbol | |
ID | 7975479 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | - |
Start bp | 1001602 |
End bp | 1002516 |
Gene Length | 915 bp |
Protein Length | 304 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644796833 |
Product | transcriptional regulator, LysR family |
Protein accession | YP_002948092 |
Protein GI | 239820907 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGTTCCGGT TCATCCGCAA AGTTACATTC CTTCGCATGG ACACCCGCTA CCTGCAGAGC TTTGTTGCCG TCGTCGAGCT GGGATCGATG GCCGAAGCGG CACGCCATCT GGACCTGACG CCTGCGGCCA TTGCGGCGCG CGTCAAGGCG CTGGAGGAAG AGATGGGGCT CTCCCTGGTG CAGCGGGCGG GGCGCTCCGT TCGCCCCACC GCAGCCGGCC TGAAGATGCT CGACCGGGCG CGCACCGTGC TGAGGGAAAT CCGCGACCTG CGGGCCGCCG CCGGCGACGG CTTCGCGCTC GGCGAATTGA AGCTCGGCGT GTTCGGCTCG GCGCTGACGG GCGTGCTGCC GCCCCTGCTC AAGCGCCTCT ACGATCGGTA CCCGGACCTG TCGGTGTTCG TCGCTCCCGG GAATTCCGTC GAGCTCTGCC GCCAGGTGAC CCTCGGCGCG CTGGATGCCG CCATCGTCGT CGAGCCCCAG TTCGCCGTGG GGAAAGGCTG CGCATGGCAC GCGCTGCTGG AGGAAGGGCT CGTGGTGGTG GCGCCCGCAG GCCTGGCGGA CCGCACTGCC CACCAGTTGC TGGAGACCGA ACCCTTCATT CGCTACGACC GCTCCGTGCT GGGTGGCCAG CTTGCCGATC GCTATCTTCG CGACAACGGC CTGGTCGTGA AGCAGCGGCT CGAGATCGAC AACCTGATGG CGATCGCCGC CCTCGTCGGG CAGGGCCTGG GCGTGGCGCT GCTGCCGGAC TGGTCGCCCA TGTGGCACGT CGGCTACGGC ATCGTGCCGG TCCCGCTGCC CTCGCGCGCG CCCGTGCGGC GCGTGGGCCT GGTGTGGGCC ACGCACGGCC CACGCGCTGC CTTGTCGCAG GCGCTGCTGC ACGAAGCGCA GGCCATGTAC GCTCAGGAAA ACTGA
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Protein sequence | MFRFIRKVTF LRMDTRYLQS FVAVVELGSM AEAARHLDLT PAAIAARVKA LEEEMGLSLV QRAGRSVRPT AAGLKMLDRA RTVLREIRDL RAAAGDGFAL GELKLGVFGS ALTGVLPPLL KRLYDRYPDL SVFVAPGNSV ELCRQVTLGA LDAAIVVEPQ FAVGKGCAWH ALLEEGLVVV APAGLADRTA HQLLETEPFI RYDRSVLGGQ LADRYLRDNG LVVKQRLEID NLMAIAALVG QGLGVALLPD WSPMWHVGYG IVPVPLPSRA PVRRVGLVWA THGPRAALSQ ALLHEAQAMY AQEN
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