Gene Vapar_6164 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_6164 
Symbol 
ID7975040 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand- 
Start bp890421 
End bp890984 
Gene Length564 bp 
Protein Length187 aa 
Translation table11 
GC content63% 
IMG OID644796719 
ProductHNH endonuclease 
Protein accessionYP_002947993 
Protein GI239820808 
COG category[V] Defense mechanisms 
COG ID[COG1403] Restriction endonuclease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAACCCC AAGTACTTCA GCTGGATGTC CAGGGCACGC CTCAAGCATG GATTTCGCTC 
GAGCAGGCAG CATCCCACTA CGCCACTGGT GCTGTCGTCT GGGAAGACGG CGCAGGCCCA 
TTGGCCACGA TGCGTGGCGG CTTCAATGTG GCGCGCGGCG TGCAGTCCCG GCTCGAGATT 
TCACCGATCA TCGCTCTCAG GGGCTGTGCA AAGGTCAACT TGTTCGAGCA CACGCCCGCC 
TTCAACCGGC GCAAGCTCTT TGTCCGAGAT CGCTTCATCT GCGCGTACTG CGCCCAGCGA 
TTCCGCGAGC AGGACCTGAC GTGCGAGCAC ATCGTTCCCG AGAGCCGCGG CGGTACCTGG 
GACTGGATGA ACCTGGTGGC CGCTTGCCGC GCGTGCAACT CCGAGAAAGC GGACCGGACG 
CCGGAGGAAG CCGGCATGAA GCTGGTCTAT CTTCCGTATG TTCCCAGCAG GTGGGAAGAC 
TTCCTCCTGG AGGGACGGAA TGTGCGAGCC GACGTGCACG AGTGGCTGGC GAGTCGGCTG 
CCGAAAGGCT CCAGGCTCAA CTGA
 
Protein sequence
MKPQVLQLDV QGTPQAWISL EQAASHYATG AVVWEDGAGP LATMRGGFNV ARGVQSRLEI 
SPIIALRGCA KVNLFEHTPA FNRRKLFVRD RFICAYCAQR FREQDLTCEH IVPESRGGTW 
DWMNLVAACR ACNSEKADRT PEEAGMKLVY LPYVPSRWED FLLEGRNVRA DVHEWLASRL 
PKGSRLN