| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6160 |
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| Symbol | |
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| ID | 7975036 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 884114 |
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| End bp | 887137 |
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| Gene Length | 3024 bp |
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| Protein Length | 1007 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644796715 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_002947989 |
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| Protein GI | 239820804 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCGGCTCA AGCTGAGAAC GAAGACAGCC TTGCTCATCA CCTTGCTCGT GCTCGCCCTG
GTGGGTGCAA CGGGCTGGTG GCAGTACCGA AGCCTCTCCA GCGAATACGT CGGCCTGATG
CGCGAGCAGC AACAGGCGCT CACCGACAGC GCCGCGGCGG ACCTCGACTA CAAGCTGGGC
GTTCACCTGG CCGCGCTGTC GCGTGCGGCG CGCGAACTCG GCGCGGAAGG CTTTGCGGAC
CCGGCGGCGC AGCAGCGCTT TCTTGCGGAC AAGGACCTGC GCGCGATGTT CGACAACGCC
GCGCTGGCCA CGCCGGACGG CGCCATCGTC GCGATCCATC CCGCCGCGGC CCAGCCGCCG
AACGTGGCCG ACCGCGACTA CTTCAAGCAG GTGCGCGACC GGCGCGAGCC CGCCATCTCG
GCGCCGCTGC TCACCAAGGG CGGGCGGCAG CCCGCGGTGG TCATGGCCGT GCCCGTCGAG
GCACCGGATG GGCGCCTGGC CGGCGTGCTG GGCGCGGCGC TGGACCTGCA GCGCGCCAAC
GTGCTCGGCG ACCTGAGCCG CGCCACCGTC GGCCGCGGTG GCCACTACGA GATCGTGACG
CGCGGCGAGT CGCCGCGGAT CGTCATGCAT CCCGATGCGA AGCGGCTGCT CGAGCCTGCC
GCGGCCAGCA CGGCGGCCCT TGCCGGCGGT CCCGAGAACG ACCTCGCCAC GCACGCCACC
GTGCGCAGCG CCAACTGGGA TCTTCGCCTC GTGGTGCCGG CCCGCGCCGC CTACGCGCCG
CTGGAGCAGG CACGGCGCAA CCTGCTGCTG CAGCTGCTGT GGCTCGGCCT GGGCTGCGCG
CTGCTGGTGT GGCTGGGCAC GGCCTGGGTC ATGCGTCCGC TGGAGGCACT GAGCAACGCG
ATCCGCACGC TGCGCCAATC ACCGGACAGC CAGGTCAGGC TCGACGTCGT CGCCAACGAC
GAGCGCGGCG ACCTGGCGCG CGAGTTCGAC GCATTGATGG GCGAGCTGCG CGAGCAGCGG
CTCGAGGTGG CCGCGGTGAC CGATGCATCG CCCGTGGGAC TGTTCCGCTG CGACAGCGAA
GGACGCATGA CCTACGTGAA CGACGAATAC CTGGCGATCC ACGGACTGGC GCGCGAAGAG
GCGCAGGAGG GCTGGCTCAC GCTGGTGCGC GAGGAGATCC GCGATAAGGT CCGCCAGGAC
TGGGTCCGCA TCGTGAGCGC CGCCGAGCCG CTGAACGCCA CGCGCCGGCT GCACCGCAGG
GACGGCACGC AGGTGCTGGT GGCCTTGCGG AGCCGGCCCG TGCTGGCTGC GTGCCGCGTC
ATGGGCCATG TCGGAACGGT GACCGACATC ACCGAGCGCA CGCGCGCCGA GCGGGCCCTT
CGCACGCTCA CGGCCATCTT CGACATGACG ACCGACTTCA TCATCCAGAA CGATGCGAAG
GGGCGGCTCA TCTACATGAA CCCCGCCGCG CGCCGCCGCA CCGGCGTGGA CCTCGATGCG
CCGATCGAGA CGCTGAAGGT GTCCGACTTC AATCCGCCGC AGACGCTGGA GCGGTTCAGG
TCGGAGGTGG TGCCCACCGC GGTCGCCACC GGCGTCTGGG TCGGCGAGTC GGTGGTGTGG
GATGCGCAGA AGCAGCCGTT CCCGGTCAGC CACATGGTGA TCGCGCATCG CGACAAGCAC
GGCAAGCTCG AATATTTCTC GGGGCTGATG CGCGACATCT CTGCGGCCAA GGCCGCGGAG
CAGGCGCTGC GCGAGAGCGA GCAGCGCCTG CGCATGGTGA CGGACCACCT GCCGGCGCTG
ATCTCCTACC TGGACCGCGA GCTGCGCTTC CGTTTCGTCA ACAAGGCCTA CCAGGACTGG
TTCGGTATCG AGCCGCAGCA GCTGCTCGGC CGCAGCCTGC GCGAGTTCTA CGGCGAGGAG
GCATGGGCGC AGATGGAGCC GTACATCCGC GCGGCCCTGG GCGGACGCCA GGTCACCTAC
GAGCGGCGCG TGACGGGGGC CGGCGGGCGC CGCGACATCC AGGCCACGCT GGTGCCGGAG
CGCAACGAAG CGGGCGAGGT GGTGGGCCTC TACACGCTGG ACAGCGACAT CACCGCGCAT
CACGAGGCCG AGGAAGCGCT GCAGGAAAGC GAAGCCCGCC TGCGCACCGT GGCCGACGCG
CTGCCGATGC GGGTGGCCTA CATCGATGCC GACGAGCGCT ATCGCTTCAA CAACCTGGCC
TACGAACGCG AGTTCGGCCT CTCGCGCGAC CAGATCCAGG GCCATACCGT GCAGGAGCTG
CTGGGCGAGC CGGCCTACGA ATCCGTGAAG CCGCACATCC GCGCCGCGCT GGCCGGCGAG
GTCGTCACCT TCCAGAGCGA AGTCAGCCAG AGCGACAGCT ACAACTGCTA CGAGGCCCAG
TACATCCCGC AGCCCGCGGC CAATGCCGAC ACCATCGTCG GCTTCCATGC GGTGATCACC
GACATCACGC GGCAGAAGCT CGAGGAGAAG CGCCTGGTGG GCCTGGCGCA GATCGACCCG
CTCACCGGCC TGGCCAACCG CGCCGGCTTC GAGGCGCGGC TGGGCGAAGC CATGGACCGC
AGCCGCAGCG CAGGAGCCCT GATGGCGCTG ATGTACCTGG ACATCGACGG CTTCAAGCAG
ATCAACGACC AGTTCGGGCA CCAGACGGGC GACGAGCTGC TGAAGGCCTT CTCGGGCCGG
CTGTCGCAGG GGCTGCGTTC CAGCGACGTG CGCGCGCGCC TGGGCGGCGA CGAGTTCACG
GTGATCATGG AGGGGCTGCC CCATGCCGAC ATTGCGGTCG CCGCCGCCAC GAAGCTCGTG
CTGGCCATGC AGACGCCGTT CACCGTCGAG CCGCAGCGCA CGATCAACGT GACCGCGAGC
ATCGGCCTGG CGTTCTACCA GGGCGGCGCC GCAACCTCGG CCGCACTGGT GAAGCAGGCG
GACGAGATGC TCTACCGCGC CAAGCGGGCC GGCCGCAACA ACGTGCAGAC GGCGCCGCTG
CCGGTCGAGG GCGGCCAGAC CTAG
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| Protein sequence | MRLKLRTKTA LLITLLVLAL VGATGWWQYR SLSSEYVGLM REQQQALTDS AAADLDYKLG
VHLAALSRAA RELGAEGFAD PAAQQRFLAD KDLRAMFDNA ALATPDGAIV AIHPAAAQPP
NVADRDYFKQ VRDRREPAIS APLLTKGGRQ PAVVMAVPVE APDGRLAGVL GAALDLQRAN
VLGDLSRATV GRGGHYEIVT RGESPRIVMH PDAKRLLEPA AASTAALAGG PENDLATHAT
VRSANWDLRL VVPARAAYAP LEQARRNLLL QLLWLGLGCA LLVWLGTAWV MRPLEALSNA
IRTLRQSPDS QVRLDVVAND ERGDLAREFD ALMGELREQR LEVAAVTDAS PVGLFRCDSE
GRMTYVNDEY LAIHGLAREE AQEGWLTLVR EEIRDKVRQD WVRIVSAAEP LNATRRLHRR
DGTQVLVALR SRPVLAACRV MGHVGTVTDI TERTRAERAL RTLTAIFDMT TDFIIQNDAK
GRLIYMNPAA RRRTGVDLDA PIETLKVSDF NPPQTLERFR SEVVPTAVAT GVWVGESVVW
DAQKQPFPVS HMVIAHRDKH GKLEYFSGLM RDISAAKAAE QALRESEQRL RMVTDHLPAL
ISYLDRELRF RFVNKAYQDW FGIEPQQLLG RSLREFYGEE AWAQMEPYIR AALGGRQVTY
ERRVTGAGGR RDIQATLVPE RNEAGEVVGL YTLDSDITAH HEAEEALQES EARLRTVADA
LPMRVAYIDA DERYRFNNLA YEREFGLSRD QIQGHTVQEL LGEPAYESVK PHIRAALAGE
VVTFQSEVSQ SDSYNCYEAQ YIPQPAANAD TIVGFHAVIT DITRQKLEEK RLVGLAQIDP
LTGLANRAGF EARLGEAMDR SRSAGALMAL MYLDIDGFKQ INDQFGHQTG DELLKAFSGR
LSQGLRSSDV RARLGGDEFT VIMEGLPHAD IAVAAATKLV LAMQTPFTVE PQRTINVTAS
IGLAFYQGGA ATSAALVKQA DEMLYRAKRA GRNNVQTAPL PVEGGQT
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