| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6121 |
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| Symbol | |
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| ID | 7975567 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 842973 |
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| End bp | 843611 |
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| Gene Length | 639 bp |
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| Protein Length | 212 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644796677 |
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| Product | two component transcriptional regulator, LuxR family |
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| Protein accession | YP_002947951 |
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| Protein GI | 239820766 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.808445 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGTGGACG ATCACGACCT GGTGCGCCTG GGTGTGCGCG CGCTGCTGGA AGCACAGTCC
TCGCCCTCGG GCGAAACCCT CGAGGTCTTC GAGGCCGGCA ATCTCGCCGA CGCCCTGACC
CTGTACGAAA GAGTCCGCGA TGCCGTGGAC CTGGTGCTGC TGGACCTGGC CTTGCCCGAC
ACCCAGGGCC TCAGTGGCCT GATGGAATTT CGCGCCCGCT ATCCGGCCGC GCGCATCGTG
GCGCTCTCCG GGTCCGGCAC CACCTCGCTT GCCCAGAGCA CGATCGCGCA GGGAGCGCTG
GGGCTGGGCG CCAGCGCCTT CCTCCCCAAA TCTGCCAACC TCAAGGAGGT GGTGAGCTTC
ATCCGCGCCT GCGGGCTGCT CGGAAGCAAC GCCATCGACG GCTCGCCCCG TCCGGCGAGC
CCCTCGGTTC GCCCCATCAA GTCGTCTCGT GACCAAGCCT GGCAGGCGCT CGCCCCGCGG
CAGGCGCAGG TGCTCCAGTG GATATTGGAA GGAAAGACCA ACAAGGAGAT TGCGGAGGCC
GCGAGCCTTG GCGAAGGCAC CGTCAAGAAC TACGTGTCGA CCATCCTCCT GCTGTTCGGC
GTGCGCTCCC GTGCGCAGCT GATCAGCAGC TTTCGCTGA
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| Protein sequence | MVDDHDLVRL GVRALLEAQS SPSGETLEVF EAGNLADALT LYERVRDAVD LVLLDLALPD
TQGLSGLMEF RARYPAARIV ALSGSGTTSL AQSTIAQGAL GLGASAFLPK SANLKEVVSF
IRACGLLGSN AIDGSPRPAS PSVRPIKSSR DQAWQALAPR QAQVLQWILE GKTNKEIAEA
ASLGEGTVKN YVSTILLLFG VRSRAQLISS FR
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