| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6089 |
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| Symbol | |
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| ID | 7975535 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 806816 |
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| End bp | 807628 |
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| Gene Length | 813 bp |
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| Protein Length | 270 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644796645 |
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| Product | phosphonate ABC transporter, inner membrane subunit |
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| Protein accession | YP_002947919 |
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| Protein GI | 239820734 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3639] ABC-type phosphate/phosphonate transport system, permease component |
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| TIGRFAM ID | [TIGR01097] phosphonate ABC transporter, permease protein PhnE |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAACCCA CGGTCCATAT CGTCCGCCCG AGCCTGGCGC CTGCGGCGTC CGCCGCTCCC
AAGCGCAGCC TCGCCTGGCA GCTCTCATGG GCGGGCCTGC TCATCTTGCT GGCCGCGTCC
TGGAAGGGCG CCGACATGCG TCCGTTCGAA CTCTGGCGCG ATTCCGGCAA CATTGCCACC
TACGCGGCCG AGTTCTTTCC GCCGAATTTC ACGCAGTGGC GCATGTACCT GCAGGAGATG
GTCGTCACCT TGCAGATCGC GCTGTGGGGC ACGGCGCTGG CCGTGGTCAC CGCCGTGCCG
CTCGCGTTGC TGGCTTCCGC CAATATCGTG CCCTGGTGGA TCTACCAGCC GATGCGCCGC
CTCATGGACA GCTGCCGCGC CATCAACGAG ATGGTGTTCG CGATGCTGTT CGTGGTGGCC
GTGGGCCTGG GCCCCTTCGC CGGCGTGCTG GCGCTGTGGG TGCATACCAC CGGCGTGCTG
GCCAAGCTGT TCGCCGAAGC CGTGGAAGCC ATCGACCCGC AGCCAGTGGA AGGCATCCGC
TCCACGGGCG CCAGCGCGCT GCACGAGATC GTCTACGGCG TGCTGCCGCA GGTGATGCCG
CTGTGGATTT CGTATGCGCT GTACCGCTTC GAGTCGAACG TGCGCTCGGC CTCGGTGGTG
GGCATGGTGG GCGCGGGCGG CATCGGCGTG GTGCTGTGGG AAATCATCCG CGGCTTCCAG
TACGCCGAGA CCTGCGCGGT GATGCTGATC ATCGTGGTGA GCGTGAGCGC CATCGACCTG
GCGTCGGCGC GCATCCGCAA GTTCCTGATC TGA
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| Protein sequence | MQPTVHIVRP SLAPAASAAP KRSLAWQLSW AGLLILLAAS WKGADMRPFE LWRDSGNIAT
YAAEFFPPNF TQWRMYLQEM VVTLQIALWG TALAVVTAVP LALLASANIV PWWIYQPMRR
LMDSCRAINE MVFAMLFVVA VGLGPFAGVL ALWVHTTGVL AKLFAEAVEA IDPQPVEGIR
STGASALHEI VYGVLPQVMP LWISYALYRF ESNVRSASVV GMVGAGGIGV VLWEIIRGFQ
YAETCAVMLI IVVSVSAIDL ASARIRKFLI
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