| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6020 |
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| Symbol | |
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| ID | 7975305 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 744844 |
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| End bp | 746364 |
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| Gene Length | 1521 bp |
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| Protein Length | 506 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644796581 |
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| Product | protein of unknown function DUF112 transmembrane |
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| Protein accession | YP_002947855 |
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| Protein GI | 239820670 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3333] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.522879 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAGTCC TGAACAACCT CGCGTTCGGT TTCTCGCACG CCCTGACCTG GCACAACCTG
ATGTACTGCG CCATCGGCTG CACCGTGGGA ACACTGGTGG GCCTGCTGCC GGGCCTCGGG
CCGCTGGCCA CCATCAGCCT GCTGCTGCCG CTGACCTATT CCATTCCGAC CACCGGCGCG
CTGATCATGC TGGCCGGCAT CTACTACGGT GCGCAATACG GCGACAGCGT GAGCGCAATC
ACGATGAAGA TCCCGCATGC GAGCAGCATC GTGGCCTGCA TCGACGGCTA CGCGATGACG
CTCAAGGGGC AGACCGGCCT GGCGCTGTTC ACGGCCGGCT TCTCCAGCTT CATCGGCGGC
ACGGTCTCGA TCCTGGTGCT GTCGTTCCTT GCGCCCGTGC TGGGCGAGGT CGCCTTCCTG
TTCGGGCCGG CGGACTACGT CGCGATGATG CTGGTGGGCT TCGTTTGCGT GAGCTTCGTC
ACCACCGGCA GCCTGCTGAA CGGCCTGGCG ATGTGCATGA TCGGCGTGCT GCTCGGCACC
ATCGGCACCG ACGTGAACAG CGGCATGGCG CGCTTCACCA TGGACATGCC CTTCCTGACC
GACGGCGTGG GCATCGTGAG CATCGCGCTC GGCTGCTTCG GCATCGCCGA GATCACCAAG
AACCTCGACT CGCGCGAGGA GCGCTCGCCC TTCAACGGCA AGATCAACCT CATTCCGACC
TGGGCCGAGT TCAAGCGGAT CATCCCCAGC GCGCTGCGCG GCAGCGTGAT CGGCTCGTTC
CTGGGCATCC TGCCCGGCGG CGGCCCCACC ATCGCGCAGT TCGCCGCCTA CGCGCTCGAC
AAGAAGGTCA GCAAGTACAA GCACGAGATC GGCACCGGCT GCATCGAGGG CGTGGCCGGC
CAGGCCGCGG CCGACGAAGC GGCGGCGCGC ACGAGCTTCA TCCCGCTGAT GAGCATCGGC
ATTCCCGAGA ACGCCGTGAT GGCGCTGATG CTGGCGGCCT TCATCATCAA GGGCATCCAG
CCCGGGCCGA ACATGATCGC GAGCCACCCC GAGCTGTTCT GGGGCCTGGT GGCCAGCATG
TGGATCGGCA ACGTGTTCCT GCTGGTGCTG AACGTGCCGC TGGTGCGCTA CTGGCTCTCG
GTGTTCAAGA TTCCGTACAG CGTGCTGTTC CCGTCGATCC TGTTCTTCTG CTGCATCGGC
ACCTACAGCG TCAACAACAA CCTGGACGAC GTGTTCATCA CCGCCGCCTT CGGCTTCATG
GGCTACATGT TCATGCGGCT CGAGCTCGAC GCCGCGCCGC TGATGCTCGG CTTCATCCTC
GGACCGATGC TCGAAGAGAA CTTCCGCCGC GCGATGCTGC TGAGCCGCGG AAGCTTCGGT
ACCTTCGTGT CGCGCCCCAT CAGCGGCACC TTGCTGGGCC TGATCGGTAT CTTCGTCTTG
TGGCAGGTGG TCTCGTTCGT GCTGCAGGCC CGAAAGAAGA TCGTCATTGC GCCGCCCGTG
GCACTGGAAC CGCAGGAGTA G
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| Protein sequence | MEVLNNLAFG FSHALTWHNL MYCAIGCTVG TLVGLLPGLG PLATISLLLP LTYSIPTTGA
LIMLAGIYYG AQYGDSVSAI TMKIPHASSI VACIDGYAMT LKGQTGLALF TAGFSSFIGG
TVSILVLSFL APVLGEVAFL FGPADYVAMM LVGFVCVSFV TTGSLLNGLA MCMIGVLLGT
IGTDVNSGMA RFTMDMPFLT DGVGIVSIAL GCFGIAEITK NLDSREERSP FNGKINLIPT
WAEFKRIIPS ALRGSVIGSF LGILPGGGPT IAQFAAYALD KKVSKYKHEI GTGCIEGVAG
QAAADEAAAR TSFIPLMSIG IPENAVMALM LAAFIIKGIQ PGPNMIASHP ELFWGLVASM
WIGNVFLLVL NVPLVRYWLS VFKIPYSVLF PSILFFCCIG TYSVNNNLDD VFITAAFGFM
GYMFMRLELD AAPLMLGFIL GPMLEENFRR AMLLSRGSFG TFVSRPISGT LLGLIGIFVL
WQVVSFVLQA RKKIVIAPPV ALEPQE
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