| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6009 |
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| Symbol | |
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| ID | 7975294 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 732341 |
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| End bp | 733297 |
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| Gene Length | 957 bp |
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| Protein Length | 318 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644796570 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_002947844 |
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| Protein GI | 239820659 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGAATCG TCTATTACCT TGCCTTGCGC CTCGCGATCG CGGCGTTGAC CCTCGTGGGG
GTGTCGATCC TGGTCTTCGC CGGCCTGCGC CTGCTGCCGG GAGGTTTCGA GCAGATGGTG
CTGGGCCCGG ATGCCTCCGT GGAGGCGCGC GCCGAACTGG TCGCGAAGTT CGGGCTCGAC
CAGTCGGGTC CGGCGCAGTA CGTGAAATGG CTGGCTGCGG CTGCGGCCGG CGACCTCGGG
GTCTCGATGG CAACCAGCAA GCCGGTGGCC GACGAAATGC TGCGCCGCGC GCCCGCCACG
GTCCAGGTCG CCCTGATCGC GACAGCCACC GCACTGGCCG TCGGGTTGCC GTTGGGCCTG
CTGGCGGGCC TGGGCGTAGG CAGGTGGCGC TCCGTCGGCC GCGTGGTGGG CGCACTGGGG
GCCAGCGTGC CCGAGGTCGT GCTCGGCAGC GTGCTCGTGT ACATATTTTC CAGATGGAGC
CTCGGTGCGA CGGTCGGCGG CTACGTGCCG CTCACCGAAG ACCCGGGTGT GAGCCTGCGC
GCCACGCTCT TGCCGGGCAT GAGCCTTGGC ATCTTCGGTA TTGCGCTGCT GGTCCGCACC
ACGCGCGATT CGGTCCAGCG CGTGCTGACC GATGGCCATG TGCTCACCGC CGTCTCGCAG
GGCCGGACTC GTTGGCAGAT CGTGCGCCAC CATGTGCTGC GCAACGCGTC GATCCCGGTG
CTGACGGTGA CGGCCACCTA CATCGGCTAC CTGCTCGGCG GCGCATTGAT TGCCGAGATC
CTGTTCTCCG TGCCCGGGAT CGGGCTCTAC GTGTACAGCG CGCTGGGCAA CCGCGACTAC
GCGGTCGTGC AGGCCGGTGT GCTGCTTGCC GCCGCTGTCT TCATCGCCGT GAATACGGTG
GCAGACCTGG GGTATGCCGT GCTCGATCCC CGCATCGACG CCAGGCGCCA CGGGTGA
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| Protein sequence | MRIVYYLALR LAIAALTLVG VSILVFAGLR LLPGGFEQMV LGPDASVEAR AELVAKFGLD
QSGPAQYVKW LAAAAAGDLG VSMATSKPVA DEMLRRAPAT VQVALIATAT ALAVGLPLGL
LAGLGVGRWR SVGRVVGALG ASVPEVVLGS VLVYIFSRWS LGATVGGYVP LTEDPGVSLR
ATLLPGMSLG IFGIALLVRT TRDSVQRVLT DGHVLTAVSQ GRTRWQIVRH HVLRNASIPV
LTVTATYIGY LLGGALIAEI LFSVPGIGLY VYSALGNRDY AVVQAGVLLA AAVFIAVNTV
ADLGYAVLDP RIDARRHG
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