| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5949 |
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| Symbol | |
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| ID | 7974988 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 667239 |
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| End bp | 668066 |
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| Gene Length | 828 bp |
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| Protein Length | 275 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644796513 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_002947787 |
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| Protein GI | 239820602 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGCCA GGAAACGCCT ACCCCTCAAT GCCCTGATCG GCATCGCCAT CGTCGGTGCG
ATCGTCACGG CGGCGCTCGT CAGCCTGGCG TGGACGCCGC ACGATCCGCT GCGCATCAAT
TTCGGCGCGC GGCTCAAGCT GCCCGGAGGC CGGTATCTGC TGGGCACCGA CGAGTTCGGC
CGTGACGAGC TGTCGCGCCT GATGGCTGGC GCCGCCACCA GCGTGTGGAT CGCGGTACTG
ACCGTCACCT TCTCCATCGT GGCAGGCAGC ATCGTCGGCG TGCTGACGGG CTTCCTGCGC
GGCTGGACCG ATCGCATCGT GATGGCCTTC AACAACGCCC TGCTGGCGTT CCCAGGCCTG
CTGCTGGCGC TGGGGCTGCT GGCGGTGGTA GGCGCCAACC AATACGGCAT CGTGCTGGCG
CTCGGGCTCG CCTACACGCC CTCGGTGACG CGCATCGTGC GCGGCACGGT GCTGTCGCTG
CGCGAGAAGG AGTTCATCGA ATCGTCGCGC GTGCTCGGCA ACTCCGAGCT TTACACGATG
GCGCGCCACG TGCTGCCCAA CTGCACCGCG CCGCTCACCG TGCTGGCCAC CTCGATGTTC
GGCTGGGTGA TCCTGGCCGA AAGCGCGCTC TCGTTCCTCG GGCTCGGCGT GCCGCCGCCG
GCGCCGACCT GGGGCAACAT GCTGGCGTCG GCGCGCCCGT TCATGGCGCA GGCCAGCTAC
CTTTCCATCC TTCCGGGCCT GTGCATCGCG CTGACGCTGC TCGGCATCAA TCTGCTGGGC
GACGCGGTGC GCGACTGGCT CGATCCGCGC ATGAAGGGTG TGCAATGA
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| Protein sequence | MTARKRLPLN ALIGIAIVGA IVTAALVSLA WTPHDPLRIN FGARLKLPGG RYLLGTDEFG
RDELSRLMAG AATSVWIAVL TVTFSIVAGS IVGVLTGFLR GWTDRIVMAF NNALLAFPGL
LLALGLLAVV GANQYGIVLA LGLAYTPSVT RIVRGTVLSL REKEFIESSR VLGNSELYTM
ARHVLPNCTA PLTVLATSMF GWVILAESAL SFLGLGVPPP APTWGNMLAS ARPFMAQASY
LSILPGLCIA LTLLGINLLG DAVRDWLDPR MKGVQ
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