| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5948 |
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| Symbol | |
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| ID | 7974987 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 665551 |
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| End bp | 667242 |
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| Gene Length | 1692 bp |
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| Protein Length | 563 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644796512 |
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| Product | ABC transporter related |
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| Protein accession | YP_002947786 |
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| Protein GI | 239820601 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase |
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| TIGRFAM ID | [TIGR02323] phosphonate C-P lyase system protein PhnK |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.934886 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGACAA CTCCCCTGGT CAGCGTGGAG GGCCTGACGC TCGCGGTCGG CATGGGCGGC
CGCGAGATCG TGCACCAGGT GTCCTTCGAC ATCGCGCCGG GCGAGATGGT CGGCATCGTC
GGCGAGTCTG GCAGCGGCAA GACGCAGGCC GCGCGCGCGC TGATGGGCCT GACGCCGCCG
CCGCTGGTGC GCACGGCCGG CCGCATTCTT TTCGATGGCG AGGACCTGGC GCTTGCCAGA
ACTTCGCGCT TGCGCGAGCT GCGCGGCGCC CGCGTCGGCA TGGTGTTCCA GGAGCCGATG
ACGTCGCTGA ACCCCTCGAT GACCATCGGC AAGCAGTTGG ACGAAGCGCT TGCGCTGCAC
CGCAGCCATC TCTCGGCCGG CGATCGGCAG ACGCGCATCC TCGACATGCT GGCACGCGTG
GGCATCCGCG ATCCCCAGGG CGCGTGCACG GCCTGGCCCC ATGAGTTCTC GGGCGGCATG
CGCCAGCGCA TGATGCTGGC TTCGGTCATG CTGCTGGAGC CGGCGCTGCT GATCGCCGAT
GAGCCGACCA CCGCACTCGA CGCGGTGGTG CAGCGCGACG TGCTGGAGCT CATGGTCGGC
CTGACGCGCG AGCACCGCAC GGCCGTGCTG ATGATCAGCC ATGATCTGCC GATGGTCGCG
CGCTTCACGC AGCGCATGGT CGTGATGCGG CACGGCGAAG TGAAGGAAAC CGGCAACACC
GACGACCTGC TCGCGCACCC GAAGCATCCC TACACCCGCG AGTTGCTGCG GGCCATGCCG
CGGCGGCGGC CCGCGCGGCA GGTGGTGGAC GAAGCGCCCA TCGTTGAGGT GCGCAACCTC
GTGGTCGACT ATCCCGGCCA TCGCCGGCTG TTCGCCAAGG GGGCGCCCAA GCGTGCGCTG
CACGGCATCG ATCTGGTGGT GCGCCCGCGC GAGGTGGTGG CCGTCGTCGG CGGCTCGGGC
TCCGGCAAGA CCACGCTGGG CCGCAGCATT GCCGGCCTGC TGAAACCGAG CGGCGGCGAG
ATCCTTTTTC GGGGGCGTCC CATCGCGCGC TCGGATGCCG GCTGGTTCGA CTACCGGCTG
CAATGCCAGA TGGTGTTCCA GGATCCGTAC GCCTCGCTCG ACCCGCGCAT GACGGTCGGC
CAGCTCGTCG GCGAGGGGCT GCGGCTGGTC AATGGCATGT CGCCCGCCGA GAAGGCAAGG
CGCGTGGCCG AGGTGCTCGA TGAAGTCGGC CTTGGCACCG CCTTTGCACC GCGCCATGCG
CACGAACTTT CAGGGGGCCA GCGGCAGCGC GTGGCCATCG CGCGCGCGCT CGTGCGCCGG
CCCGCCTTCG TGATCGCCGA CGAGCCGGTG TCGGCGCTCG ACGTGACGGT GCGCGCGCAG
GTGCTCGAGC TGTTTGCCGA GCTGCAGAAG CGTCACGGCT TTTCGTGCCT CTTCATCAGC
CACGACCTCG GCGTGGTCGA GCAGGTGGCC GACCGGGTGA TCGTGATGCA GGACGGCCGC
ATCGTCGAGC AGGGCGCGCG CGACACCGTG TTCGACGCGC CGCGGCAGGA CTACACGCGC
AGGCTGCTCT CTGCGATTCC CGCGCTGGAG CCGACCGGCG CCGGCGGCGT GCGGTTGCGC
TGGCGCTTCG GCGCGGAGGC CGAACGCCAG GCCGAAACCA GCAAGGGGGG CCCCGTCCCG
TCCTTCGCCT GA
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| Protein sequence | MTTTPLVSVE GLTLAVGMGG REIVHQVSFD IAPGEMVGIV GESGSGKTQA ARALMGLTPP
PLVRTAGRIL FDGEDLALAR TSRLRELRGA RVGMVFQEPM TSLNPSMTIG KQLDEALALH
RSHLSAGDRQ TRILDMLARV GIRDPQGACT AWPHEFSGGM RQRMMLASVM LLEPALLIAD
EPTTALDAVV QRDVLELMVG LTREHRTAVL MISHDLPMVA RFTQRMVVMR HGEVKETGNT
DDLLAHPKHP YTRELLRAMP RRRPARQVVD EAPIVEVRNL VVDYPGHRRL FAKGAPKRAL
HGIDLVVRPR EVVAVVGGSG SGKTTLGRSI AGLLKPSGGE ILFRGRPIAR SDAGWFDYRL
QCQMVFQDPY ASLDPRMTVG QLVGEGLRLV NGMSPAEKAR RVAEVLDEVG LGTAFAPRHA
HELSGGQRQR VAIARALVRR PAFVIADEPV SALDVTVRAQ VLELFAELQK RHGFSCLFIS
HDLGVVEQVA DRVIVMQDGR IVEQGARDTV FDAPRQDYTR RLLSAIPALE PTGAGGVRLR
WRFGAEAERQ AETSKGGPVP SFA
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