Gene Vapar_5945 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5945 
Symbol 
ID7974984 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand- 
Start bp660970 
End bp661611 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content67% 
IMG OID644796509 
Producthypothetical protein 
Protein accessionYP_002947783 
Protein GI239820598 
COG category[S] Function unknown 
COG ID[COG4719] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR01451] conserved repeat domain 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.310759 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTTATAC AAAAACTGAC TCAATCTTTT TTCCGCACGG CAGGCAGGCT GCCTGCTTTG 
GCTGCAAGCT TTGGCGCCGG AATGATCGCC GTGGCCAGCC TGGCTGCGCC GGCCTCGGCA 
CAGCCTGTCG CGACCCCGTC TGCGCTCGCC CCCGAGAAAA CCGTTGCGGT CACCCTGACG 
CAATTCAAGG TGGTGAAGGC TGCGGACGGC AAGGAGCAAC TGCTGGATGC TTCCTCCGTC 
AAGCCGGGCG ACATCCTGGA ATACCGGGCA ACCTACATCA ACAAAACCGG CAAGCCGGTC 
TCCGGCCTGG TCGCCGATCT GCCGATCCCC GAGGGGCTCG AGTACCTGCC GCGCAGCGCC 
AAGCCTGGTG CCGCATTGGT CAAGGCAGCC ACCAAGGATG GCGTTTTCGG CGCCGAGCCG 
CTGACGCGGA AGGCTGCGAA CAACAAGACG GAGCCCGTGC CCTACGGCGA CTACCGCGCG 
TTGCGCTGGG CGCTCGGCCA GCTGCCCGCC GGCGGCGAGA CCGCCGTGAC TGCGCGCGCC 
AAGGTCGAGA TCGTCGTTCC GCCGGAGCCC AAGACCTCCC CCGCCGCGCC CCAGGCGCCG 
CCTGTGACGG TGCAGTCCGC TGCAGGCGCT GCCTCGCGCT GA
 
Protein sequence
MLIQKLTQSF FRTAGRLPAL AASFGAGMIA VASLAAPASA QPVATPSALA PEKTVAVTLT 
QFKVVKAADG KEQLLDASSV KPGDILEYRA TYINKTGKPV SGLVADLPIP EGLEYLPRSA 
KPGAALVKAA TKDGVFGAEP LTRKAANNKT EPVPYGDYRA LRWALGQLPA GGETAVTARA 
KVEIVVPPEP KTSPAAPQAP PVTVQSAAGA ASR