| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5871 |
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| Symbol | |
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| ID | 7975922 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 578922 |
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| End bp | 580559 |
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| Gene Length | 1638 bp |
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| Protein Length | 545 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644796447 |
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| Product | AMP-dependent synthetase and ligase |
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| Protein accession | YP_002947721 |
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| Protein GI | 239820536 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCACG ACTTTCCCGA CCCGACACTG TCGCACCTGC CTGCTGACAC TTCGGTACCT
CTGCTCCTAA TGACCACCGG CGATGCCTTG CGGGACGCGG CACGACGCCA TCCGGAGCGC
ATCGCCTTGG TCGAAGTCAT GCCGCCGGGC CTGCCGTCGC TCACAGGCGC GAGCGACACG
GCGCGCCGCT GGACGTATGC GGAACTGCTT GCTCAGGCCG AACAATGCGC GCACTGGTTG
CTTACGCGCT TCACTCCTGG CGAGCGCGTC TGTCTCTGGG CGCCCAACGT GCCTGAGTGG
GTCATCCTGC AATACGGCGT GGCACTGGCA GGTCTGGTGC TCGTTACTGC CAACCCGGCG
CTGCGCAGCG CCGAACTGCG CTACGCGTTG CGCCAGTCCC GCTGCACCGG GCTGCTGTAC
ACGGCTGAAT TCCGCGGCAC CGACATGGCC GCAGTCGCGC GTGAGGTGGC AGGAGAAGTG
CGCGAGACCT TCTGTCTGCT GAATTGGCAG ACCGAGGTCC GCACGCACTC AGCCCGAGGC
GAGCTACCGC ATGTGCAAGC GCTGGATCCG GCCCAGATCC AGTACACCTC TGGCACCACC
GGCAACCCCA AAGGAGCACT GCTGCATCAC GCGGGCCTGG TTACAAGTGC CAGGCTGACA
TGCAACCGGG CCGGCATCGA GGCCAGCGTC GTAATCAGCC CCATGCCGCT GTTCCACACC
GCAGGTGCAG TACTCAGTTC CCTGGGCTGT GTGACAACCG GATCGACCTA CGTGCTGCCG
CTGCTGTTTG AGCCTGAAAC GCTCATGCGG GCGATCGCAT TAGAGCGCTG CGACGTGTTC
TATGGTGTTC CGACCATGCA GATCGCGATG CTTGATCACC CCAAGCGCGA CCAGTACGAC
CTCAGCACTC TGCGTGTTGC CATCTCCGGC GGCGCCCCCG TTCCGCCCGA GCTGCTGCAC
CGCATCGAAA CCGGCTTTCA TTGCGATCTG CTGACGCTCT ACGGACAGAC CGAATGCAGC
CCGACGATCA GCATGGTCGG CCCCAACGAC AACCAGGAGG ACAAAGCAAC GACAGTGGGC
CAACCTCTGC CACAAGTCGA AATTCGCATC GCGGATCCCG CCTCGGGAAA AACCCAATCC
GTCGGAGCTG AAGGGGAAAT CGAAGTGCGC GGCCCTCAGT GCATGCTTGG CTATTTCGAG
ATGCCAGAGG AAACTGCCCA GACAATGCGG CCCGATGGCT GGTTGCGCAC TGGCGATCTC
GGCACCCTGG ACCGGCGCGG CTATCTACGG GTCACAGGCC GACTCAAGGA CATGATCATT
CGCGGTGGCG AGAACATCTA TCCCGCCGAG GTCGAGGCGC GTCTGATGGA GCATGCCACC
GTTGCCATGG CTGTGGTATT CGGCATCCCT GACGCCAGAT GGGGCGAGGT GGTGGGCGCG
GCCGTGCAGA TCCGAGCGGG TATGCCGCTG CCGGCGGCCG AGGCGCTGCG CGCGCACTGC
CTCTCAATGC TTGCGCCTCA AAAGCTGCCG ACTGTCTGGT TCAGTTGCGA CGCCTTTCCG
CTGACGGCGT CGGGGAAGGT GCAGAAATTC CGCCTGCGGG AACTCGCCGA GACGAATCAG
CTGACTCAAA TGGTTTAG
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| Protein sequence | MSHDFPDPTL SHLPADTSVP LLLMTTGDAL RDAARRHPER IALVEVMPPG LPSLTGASDT
ARRWTYAELL AQAEQCAHWL LTRFTPGERV CLWAPNVPEW VILQYGVALA GLVLVTANPA
LRSAELRYAL RQSRCTGLLY TAEFRGTDMA AVAREVAGEV RETFCLLNWQ TEVRTHSARG
ELPHVQALDP AQIQYTSGTT GNPKGALLHH AGLVTSARLT CNRAGIEASV VISPMPLFHT
AGAVLSSLGC VTTGSTYVLP LLFEPETLMR AIALERCDVF YGVPTMQIAM LDHPKRDQYD
LSTLRVAISG GAPVPPELLH RIETGFHCDL LTLYGQTECS PTISMVGPND NQEDKATTVG
QPLPQVEIRI ADPASGKTQS VGAEGEIEVR GPQCMLGYFE MPEETAQTMR PDGWLRTGDL
GTLDRRGYLR VTGRLKDMII RGGENIYPAE VEARLMEHAT VAMAVVFGIP DARWGEVVGA
AVQIRAGMPL PAAEALRAHC LSMLAPQKLP TVWFSCDAFP LTASGKVQKF RLRELAETNQ
LTQMV
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